Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0809
(736 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 200 8e-52
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 200 8e-52
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 157 8e-39
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 146 2e-35
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 113 9e-26
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 113 9e-26
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 109 2e-24
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 70 1e-12
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 70 1e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 66 3e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 66 3e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 66 3e-11
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 38 0.010
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.091
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.16
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.28
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.28
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 32 0.37
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 32 0.37
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.37
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.64
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.85
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.85
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 2.0
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.6
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.6
Z66520-12|CAN86922.1| 220|Caenorhabditis elegans Hypothetical p... 29 3.4
Z66520-11|CAA91383.1| 269|Caenorhabditis elegans Hypothetical p... 29 3.4
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.5
U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical pr... 28 6.0
AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical ... 28 6.0
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.9
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 200 bits (488), Expect = 8e-52
Identities = 101/162 (62%), Positives = 112/162 (69%)
Frame = +1
Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 426
R TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGIS
Sbjct: 69 RGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGIS 128
Query: 427 KNGQTREHALLAFTLGVKQLIVGVNKMVPLNHHTVSPDLRKSRRKYPHTSRRLGYNPAAV 606
KNGQTREHALLA TLGVKQLIV NKM + + +++GYNP AV
Sbjct: 129 KNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAV 188
Query: 607 AFVPIFWMARRQHVGAFNQNAWFKGWQVERXEXXADGKCSLK 732
FVPI + + WFKGW VER E A GK L+
Sbjct: 189 PFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLE 230
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 200 bits (488), Expect = 8e-52
Identities = 101/162 (62%), Positives = 112/162 (69%)
Frame = +1
Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 426
R TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGIS
Sbjct: 69 RGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGIS 128
Query: 427 KNGQTREHALLAFTLGVKQLIVGVNKMVPLNHHTVSPDLRKSRRKYPHTSRRLGYNPAAV 606
KNGQTREHALLA TLGVKQLIV NKM + + +++GYNP AV
Sbjct: 129 KNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAV 188
Query: 607 AFVPIFWMARRQHVGAFNQNAWFKGWQVERXEXXADGKCSLK 732
FVPI + + WFKGW VER E A GK L+
Sbjct: 189 PFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLE 230
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 157 bits (381), Expect = 8e-39
Identities = 73/81 (90%), Positives = 77/81 (95%)
Frame = +1
Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 426
R TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGIS
Sbjct: 69 RGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGIS 128
Query: 427 KNGQTREHALLAFTLGVKQLI 489
KNGQTREHALLA TLGVKQL+
Sbjct: 129 KNGQTREHALLAQTLGVKQLV 149
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 99.1 bits (236), Expect = 3e-21
Identities = 44/49 (89%), Positives = 47/49 (95%)
Frame = +1
Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 393
R TIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 69 RGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/52 (44%), Positives = 29/52 (55%)
Frame = +1
Query: 577 RRLGYNPAAVAFVPIFWMARRQHVGAFNQNAWFKGWQVERXEXXADGKCSLK 732
+++GYNP AV FVPI + + WFKGW VER E A GK L+
Sbjct: 145 KKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLE 196
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/34 (61%), Positives = 23/34 (67%)
Frame = +3
Query: 510 STEPPYSEPRFEEIKKEVSSYIKKIGLQPSCCRF 611
STEPP+SE RF EI EVS +IKKIG P F
Sbjct: 123 STEPPFSEARFTEITNEVSGFIKKIGYNPKAVPF 156
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 3e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAER 245
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 113 bits (273), Expect = 9e-26
Identities = 54/87 (62%), Positives = 64/87 (73%)
Frame = +1
Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 426
R T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G
Sbjct: 232 RGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFE 291
Query: 427 KNGQTREHALLAFTLGVKQLIVGVNKM 507
GQT+EHALL +LGV QLIV VNK+
Sbjct: 292 NGGQTKEHALLLRSLGVTQLIVAVNKL 318
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +3
Query: 54 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 233
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 234 KAERE 248
+ ERE
Sbjct: 227 EEERE 231
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 113 bits (273), Expect = 9e-26
Identities = 54/87 (62%), Positives = 64/87 (73%)
Frame = +1
Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 426
R T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G
Sbjct: 250 RGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFE 309
Query: 427 KNGQTREHALLAFTLGVKQLIVGVNKM 507
GQT+EHALL +LGV QLIV VNK+
Sbjct: 310 NGGQTKEHALLLRSLGVTQLIVAVNKL 336
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +3
Query: 54 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 233
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 234 KAERE 248
+ ERE
Sbjct: 245 EEERE 249
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 109 bits (263), Expect = 2e-24
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + G
Sbjct: 174 TVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGG 233
Query: 436 QTREHALLAFTLGVKQLIVGVNKMVPLNHHTVSPDLRKSRRKYPHTSRRLGYNPAA-VAF 612
QTREH++L T GVK L++ VNKM ++ K R+LG+NP + +
Sbjct: 234 QTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITY 293
Query: 613 VP 618
VP
Sbjct: 294 VP 295
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +3
Query: 48 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 227
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 228 KLKAERE 248
ERE
Sbjct: 164 TNDEERE 170
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 70.1 bits (164), Expect = 1e-12
Identities = 39/86 (45%), Positives = 52/86 (60%)
Frame = +1
Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 426
R TI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 92 RGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME---- 147
Query: 427 KNGQTREHALLAFTLGVKQLIVGVNK 504
QT+EH +LA +GVK + + +NK
Sbjct: 148 ---QTKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 57 KTHINIVVIGHVDSGKSTTT 116
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 70.1 bits (164), Expect = 1e-12
Identities = 39/86 (45%), Positives = 52/86 (60%)
Frame = +1
Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 426
R TI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 92 RGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME---- 147
Query: 427 KNGQTREHALLAFTLGVKQLIVGVNK 504
QT+EH +LA +GVK + + +NK
Sbjct: 148 ---QTKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 57 KTHINIVVIGHVDSGKSTTT 116
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 65.7 bits (153), Expect = 3e-11
Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Frame = +1
Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 426
R TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 96 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP---- 151
Query: 427 KNGQTREHALLAFTLGV--KQLIVGVNKM 507
QTREH LLA +GV ++V +NK+
Sbjct: 152 ---QTREHLLLARQVGVPLDNIVVFMNKV 177
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 51 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 221
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 222 LDKLKAEREVVH 257
L+ A+R H
Sbjct: 105 LEYETAKRHYAH 116
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 65.7 bits (153), Expect = 3e-11
Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Frame = +1
Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 426
R TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 97 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP---- 152
Query: 427 KNGQTREHALLAFTLGV--KQLIVGVNKM 507
QTREH LLA +GV ++V +NK+
Sbjct: 153 ---QTREHLLLARQVGVPLDNIVVFMNKV 178
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 51 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 221
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 222 LDKLKAEREVVH 257
L+ A+R H
Sbjct: 106 LEYETAKRHYAH 117
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 65.7 bits (153), Expect = 3e-11
Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Frame = +1
Query: 247 RWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 426
R TI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 97 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP---- 152
Query: 427 KNGQTREHALLAFTLGV--KQLIVGVNKM 507
QTREH LLA +GV ++V +NK+
Sbjct: 153 ---QTREHLLLARQVGVPLDNIVVFMNKV 178
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 51 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 221
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 222 LDKLKAEREVVH 257
L+ A+R H
Sbjct: 106 LEYETAKRHYAH 117
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = +1
Query: 244 VRWYTIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 420
+R T+D+ + S + +ID PGH I+ ++ ++ D A++I+ + AG
Sbjct: 54 IRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108
Query: 421 ISKNGQTREHALLAFTLGVKQLIVGVNKMVPLNHHTVSPDLRKSRR 558
I QT EH LLA ++I+ +NK +S +K R+
Sbjct: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 66 INIVVIGHVDSGKSTTT 116
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 37.5 bits (83), Expect = 0.010
Identities = 27/69 (39%), Positives = 32/69 (46%)
Frame = +1
Query: 301 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 480
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 481 QLIVGVNKM 507
QL+V VNK+
Sbjct: 258 QLVVAVNKI 266
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.091
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGI 146
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -3
Query: 503 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 375
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGID 149
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 241 SVRWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
S++ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 183 SIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 241 SVRWYTIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
S++ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 58 SIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 185
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +1
Query: 295 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 474
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 475 VKQLIVGVNKM 507
+ Q+I +NK+
Sbjct: 155 I-QIIPVINKI 164
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 31.5 bits (68), Expect = 0.64
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +1
Query: 298 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 477
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 478 KQLIVGVNKM 507
L++ NK+
Sbjct: 182 NHLMILQNKV 191
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 21 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 131
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 21 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 131
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 307 IIDAPGHRDFIKNMITGTSQADCAVLIV 390
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 147 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 147 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z66520-12|CAN86922.1| 220|Caenorhabditis elegans Hypothetical
protein F49E12.9b protein.
Length = 220
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 557 GSILIHQEDWATTQLLSLSCPFSGWHGDNMLEP 655
GS +I WA+ +LS +C SG+H ML P
Sbjct: 179 GSHVITLWIWASIAILSTTCSHSGYHFPFMLSP 211
>Z66520-11|CAA91383.1| 269|Caenorhabditis elegans Hypothetical
protein F49E12.9a protein.
Length = 269
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 557 GSILIHQEDWATTQLLSLSCPFSGWHGDNMLEP 655
GS +I WA+ +LS +C SG+H ML P
Sbjct: 179 GSHVITLWIWASIAILSTTCSHSGYHFPFMLSP 211
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 66 INIVVIGHVDSGKSTTT 116
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical
protein K09H11.1 protein.
Length = 985
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 333 ISVSRSIND-GNIVLASFELPESNIDCVPPHAQPL 232
+S ++I+D GNI+ +F P DC+P P+
Sbjct: 197 VSSQQAIHDLGNILKLNFSYPPETRDCIPREVLPI 231
>AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical
protein Y102A11A.9 protein.
Length = 332
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 144 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEREVVHNRYCSLEVRN 287
+DK ++ KE E+ K KYA KLK + + V N Y S+ +N
Sbjct: 188 LDKSRVKTASKERNELAK---KYAEQNAKLKLKLKEVKNNYASMLEKN 232
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 301 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 396
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,383,799
Number of Sequences: 27780
Number of extensions: 378812
Number of successful extensions: 1284
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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