Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0808
         (803 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6FK10 Cluster: DNA polymerase; n=1; Candida glabrata|R...    35   2.1  
UniRef50_Q4YQN1 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  

>UniRef50_Q6FK10 Cluster: DNA polymerase; n=1; Candida glabrata|Rep:
           DNA polymerase - Candida glabrata (Yeast) (Torulopsis
           glabrata)
          Length = 1481

 Score = 35.1 bits (77), Expect = 2.1
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 278 NDHIWTSGNYQELFLGKAVPSLRILEKDFRRQTAHKPPSSL--NAFETADEVY 430
           ND IW S +  E+FL KA+ S+++ +KD    + H   +      FE  DE++
Sbjct: 338 NDMIWNSSHQFEMFLRKALSSVKVSDKDSNFLSGHFNANDFLKTPFEMIDELW 390


>UniRef50_Q4YQN1 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 120

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 23/68 (33%), Positives = 30/68 (44%)
 Frame = +2

Query: 29  LFEIFGYLKVYNQFLIYNITYKIFWLHLMCILKTRKSHLSHFFINHLSSLYEVSCV*T*S 208
           LF  F  LK   Q  I+N+ +      L  ILK    H+ + F N +  L  +S V   S
Sbjct: 48  LFPRFQCLKKIKQIFIHNVNFLSIKSSLSFILKLHSLHIRYTFHNIIILLLNISLV--YS 105

Query: 209 FITFYWLR 232
           F  F W R
Sbjct: 106 FHFFIWFR 113


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,571,982
Number of Sequences: 1657284
Number of extensions: 13424192
Number of successful extensions: 28598
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28591
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69143070360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)