BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0808 (803 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc... 29 0.77 SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 28 1.8 SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 27 4.1 SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.5 >SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosaccharomyces pombe|chr 1|||Manual Length = 393 Score = 29.1 bits (62), Expect = 0.77 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = +2 Query: 263 NNQFANDHIWTSGNYQELFLGKAVPSLRILEKDFRR 370 + +F ND +W +GN +E+F K LR+ ++ R+ Sbjct: 55 SEKFENDTLWLNGNAEEIFANK---RLRVCVEELRK 87 >SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharomyces pombe|chr 3|||Manual Length = 642 Score = 27.9 bits (59), Expect = 1.8 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = -1 Query: 449 TYYVIANIPHPQSRRHSRMMEAYEQFAYESLSPEYEDWARPYPKTVPDNF 300 +YY ++ + HP RH+ +A + ++ + YE + P K + DNF Sbjct: 27 SYYRLSRLFHPD--RHTADQKAAAEEKFQIIQHAYEVLSDPSKKEIYDNF 74 >SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces pombe|chr 1|||Manual Length = 852 Score = 26.6 bits (56), Expect = 4.1 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +2 Query: 266 NQFANDHIWTSGNYQELFLGKAVPSLRILEKDFRRQTAHKPPSSLNAFETADEV 427 +Q A +W G ++ F+ + + + I EK F+RQ +HK S + A +V Sbjct: 714 DQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQ-SHKQSLSSCVVDEAQDV 766 >SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 126 Score = 25.4 bits (53), Expect = 9.5 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -2 Query: 259 AAEFTRXTDS*PIECYKRL 203 AAEF TD+ PIE Y+ L Sbjct: 19 AAEFVEFTDNIPIEIYRSL 37 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,010,946 Number of Sequences: 5004 Number of extensions: 59836 Number of successful extensions: 127 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 127 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 390427050 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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