Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0808
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    29   0.77 
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    28   1.8  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    27   4.1  
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.5  

>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 263 NNQFANDHIWTSGNYQELFLGKAVPSLRILEKDFRR 370
           + +F ND +W +GN +E+F  K    LR+  ++ R+
Sbjct: 55  SEKFENDTLWLNGNAEEIFANK---RLRVCVEELRK 87


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 449 TYYVIANIPHPQSRRHSRMMEAYEQFAYESLSPEYEDWARPYPKTVPDNF 300
           +YY ++ + HP   RH+   +A  +  ++ +   YE  + P  K + DNF
Sbjct: 27  SYYRLSRLFHPD--RHTADQKAAAEEKFQIIQHAYEVLSDPSKKEIYDNF 74


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 266 NQFANDHIWTSGNYQELFLGKAVPSLRILEKDFRRQTAHKPPSSLNAFETADEV 427
           +Q A   +W  G  ++ F+ + + +  I EK F+RQ +HK   S    + A +V
Sbjct: 714 DQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQ-SHKQSLSSCVVDEAQDV 766


>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 126

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 259 AAEFTRXTDS*PIECYKRL 203
           AAEF   TD+ PIE Y+ L
Sbjct: 19  AAEFVEFTDNIPIEIYRSL 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,946
Number of Sequences: 5004
Number of extensions: 59836
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)