Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0808
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0539 + 3941189-3941896,3942110-3942394,3942508-3943394,394...    29   4.3  
12_01_0983 - 9979572-9980570,9980878-9981544,9982864-9983217,998...    29   5.7  
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277...    29   5.7  
10_01_0330 + 3614562-3614574,3614676-3615118,3617700-3617825,361...    28   7.6  
05_04_0223 - 19192411-19192951,19193363-19193388                       28   7.6  
06_03_0024 - 15563574-15563632,15563887-15563914,15564017-155642...    28   10.0 
06_01_0460 + 3276855-3277967                                           28   10.0 

>02_01_0539 +
           3941189-3941896,3942110-3942394,3942508-3943394,
           3943473-3943643,3943726-3943744,3943763-3944014,
           3944100-3944138,3944244-3944282
          Length = 799

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 437 IANIPHPQSRRHSRMMEA-YEQFAYESLSPEYEDWARPYP 321
           +A  P P++R H   + A Y +   +S+ PEYE +   YP
Sbjct: 354 LAYKPTPETRVHGAQLRADYAKVQVDSVKPEYELFPLKYP 393


>12_01_0983 -
           9979572-9980570,9980878-9981544,9982864-9983217,
           9983334-9983668
          Length = 784

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 242 SSEFRCRNNQFANDHIWTSGNYQELFLGKAVPSLRILEKDFR 367
           S +FRC       +H    G  + LF+ +A+P LR L  +FR
Sbjct: 666 SHQFRCLKQFIFKNH---GGGLEMLFMQEAMPELRWLSLEFR 704


>05_01_0355 -
           2774217-2774318,2774608-2774775,2774872-2775090,
           2775176-2775319,2775485-2775767,2775874-2775929,
           2776012-2776161,2776254-2776340,2776414-2776449,
           2777100-2777162,2777247-2777327,2777407-2777496,
           2777690-2777767,2777855-2778058,2778139-2778186,
           2778262-2778447,2779879-2779978,2780121-2780260
          Length = 744

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 426 YISNDVVGVMSDRHAGHRWRRHIPRWRQAGSI*RLVDHRMWYIDRFF 566
           YI++ V+  + D+H     R  + RW     + R +    +Y+DR+F
Sbjct: 76  YITSMVLPSLRDKHDEFMLRELVKRWSNHKIMVRWLSRFFFYLDRYF 122


>10_01_0330 +
           3614562-3614574,3614676-3615118,3617700-3617825,
           3618379-3618786,3618871-3619311,3619399-3619779
          Length = 603

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 437 IANIPHPQSRRHSRMMEA-YEQFAYESLSPEYEDWARPYP 321
           +A  P P++R H   + A Y +   +S+ PEYE +   YP
Sbjct: 500 LAYKPTPETRVHGVQLRADYAKVQVDSVKPEYELFPLKYP 539


>05_04_0223 - 19192411-19192951,19193363-19193388
          Length = 188

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 447 GVMSDRHAGHRWRRHIPRWRQAGS 518
           G +S+R A  RWRR +PR R+ G+
Sbjct: 59  GKLSNRTARWRWRRLVPRARRDGT 82


>06_03_0024 -
           15563574-15563632,15563887-15563914,15564017-15564202,
           15564283-15564332,15564435-15564691,15564772-15564910,
           15565627-15565716,15567354-15567663
          Length = 372

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 678 RNISMXEGNLHGXLSLNVPKHSFIAKAIKRSPQVHAYRRTDLCTTS 541
           + +SM + + +G  SLN+  H FI K++   P    +    + TTS
Sbjct: 281 QEVSMLDTSHNGTHSLNLISHLFIWKSLSSFPDQSVFCAVAISTTS 326


>06_01_0460 + 3276855-3277967
          Length = 370

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -1

Query: 467 MSVAHHTYYVIANIPHPQSRRHSRM-MEAYEQFAYESLSPEYEDWARPYPKTVPDNFHLS 291
           ++ A     V+ + P P +R+  R+ +E  +     SL PE E    P P T PD++ L+
Sbjct: 18  LTAAAAALLVLLDPPAPSARKRRRLDVEELDPVPPPSLQPEPEPL--PLPPTSPDHYPLA 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,884,466
Number of Sequences: 37544
Number of extensions: 367516
Number of successful extensions: 846
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)