Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0808
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02980.1 68414.m00268 cullin family protein similar to cullin...    31   1.2  
At4g02570.1 68417.m00351 cullin family protein similar to cullin...    28   8.3  

>At1g02980.1 68414.m00268 cullin family protein similar to cullin 1
           [Homo sapiens] GI:3139077; contains Pfam profile
           PF00888: Cullin family
          Length = 742

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 426 YISNDVVGVMSDRHAGHRWRRHIPRWRQAGSI*RLVDHRMWYIDRFFDMHG 578
           Y    V+  + ++H  +  R  + RW     + R + H   Y+DRF+   G
Sbjct: 74  YNKQTVLPAIREKHGEYMLRELVKRWANQKILVRWLSHFFEYLDRFYTRRG 124


>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
           [Homo sapiens] GI:3639052; contains Pfam profile
           PF00888: Cullin family
          Length = 738

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 426 YISNDVVGVMSDRHAGHRWRRHIPRWRQAGSI*RLVDHRMWYIDRFF 566
           YI++ V+  + ++H     R    RW     + R +    +Y+DR+F
Sbjct: 73  YINSTVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYF 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,406,599
Number of Sequences: 28952
Number of extensions: 300278
Number of successful extensions: 630
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)