Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0807
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0698 + 5093656-5093899,5094736-5094908                           30   1.7  
05_06_0168 - 26115947-26116007,26116109-26116398,26116934-261172...    30   1.7  
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494...    30   2.2  
08_02_0772 + 21035762-21037567                                         28   8.8  

>06_01_0698 + 5093656-5093899,5094736-5094908
          Length = 138

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 291 GKQSRTMSSEPCTRAGRRTPCSSSCCFVSD 202
           G    T ++ P TR+G R+PC++ C  V D
Sbjct: 12  GDDPATAATAPPTRSGHRSPCAARCGKVGD 41


>05_06_0168 -
           26115947-26116007,26116109-26116398,26116934-26117234,
           26117333-26117403,26118067-26118174,26118700-26118774,
           26118901-26118959,26119119-26119179,26120979-26120990
          Length = 345

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
 Frame = +2

Query: 245 PALVQGSEDIVRDCF-PVEFTLILA-ENYVKLMYRRDGLAFTLSDNGGVAYGDSKDRTSS 418
           P +V G+  ++   F P+    I A +  V+L+ + DG   T +D  G       D+  +
Sbjct: 42  PGIVIGAFSLIGIIFIPIGLVSIAASQEVVELVDKYDGECVTANDKVGFIQDTKTDKACT 101

Query: 419 RVSWKFIPLWENNKVYFKIENTERKQNLALKS 514
           R      P+    +VY+++EN  +     +KS
Sbjct: 102 RTITVPKPMKGPIQVYYQLENFYQNHRRYVKS 133


>01_05_0653 -
           23948911-23948937,23949031-23949141,23949361-23949441,
           23949865-23949984,23950088-23950252,23950344-23950493,
           23950565-23950674,23951401-23951518,23951597-23951827,
           23952345-23952524,23953639-23953908,23954930-23954979,
           23955213-23955288,23955396-23955483,23956010-23956101,
           23956200-23956529,23957484-23957593,23957810-23957907,
           23959538-23959566
          Length = 811

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = +1

Query: 361 YIERQWRGCLRGQQRQDQFKSQLEIHSAVGEQQGLL----QDREH*AQTELGIEVRTNRN 528
           YIE Q       +Q+Q Q+  Q   H  +  QQ LL    Q ++   Q +   + + +R+
Sbjct: 77  YIETQQAKAEHQKQQQQQYHHQQHQHQQIQMQQMLLQRAAQQQQQQQQQQQQQQQQLHRD 136

Query: 529 GDHMAYGV-ANFDG 567
           G H+  G+ + F G
Sbjct: 137 GSHLFNGITSGFSG 150


>08_02_0772 + 21035762-21037567
          Length = 601

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
 Frame = +3

Query: 192 VVNNLIRN-NKMNCMEYAYQLWCKAPRTS----SGIVSRLSSH 305
           V N+LI    K  C++ AYQ++C+ P+ S    S ++S L+S+
Sbjct: 265 VRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLASN 307


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,226,053
Number of Sequences: 37544
Number of extensions: 350720
Number of successful extensions: 898
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)