Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0807
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.8  
SB_51126| Best HMM Match : MSG (HMM E-Value=6.4)                       28   9.0  
SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)                28   9.0  

>SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1702

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 682  PKLSIVLDSVKAML*SRLKMKNKLRYLIQRE 590
            P++ ++  S KA    RLK K KLR L+ RE
Sbjct: 1525 PRILVLAQSFKAGSHERLKRKQKLRSLMSRE 1555


>SB_51126| Best HMM Match : MSG (HMM E-Value=6.4)
          Length = 194

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 359 FTLSDNGGVAYGDSKDRTSSRV-SWKFIPLWENNKVYFKIENTERKQNL 502
           FTL D+    YG+ K+   S+V S   + L  +NKVY     T  ++ L
Sbjct: 101 FTLRDDRNKFYGNRKEIAGSKVSSISSLALESDNKVYISESLTPSRKKL 149


>SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)
          Length = 310

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 602 NSAGTRYHWALKPSKLATP*AMWSPFLLVRTSMPSS 495
           NSAG +  WA  P  L  P A     + VRT+ PSS
Sbjct: 242 NSAGIQREWAGVPRMLFKPGAKQPRCVCVRTTGPSS 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,229,201
Number of Sequences: 59808
Number of extensions: 420870
Number of successful extensions: 1022
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)