Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0807
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g30550.1 68416.m03866 hypothetical protein includes At2g05890...    29   3.2  
At1g07000.1 68414.m00745 exocyst subunit EXO70 family protein si...    29   3.2  
At5g45540.1 68418.m05593 expressed protein contains Pfam domain,...    28   5.6  
At1g13750.1 68414.m01614 calcineurin-like phosphoesterase family...    28   5.6  
At5g52730.1 68418.m06545 heavy-metal-associated domain-containin...    28   7.4  
At5g52610.1 68418.m06532 F-box family protein contains F-box dom...    28   7.4  
At3g31950.1 68416.m04046 hypothetical protein                          27   9.8  
At2g29060.1 68415.m03532 scarecrow transcription factor family p...    27   9.8  
At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF...    27   9.8  

>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 509

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/66 (21%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +3

Query: 6   KMKSAVVVLCLFAASLYAD-EGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNKGXL 182
           K K+   +LC+   +++   +      +  +++ ++++  DYD+ V+ S LI  +    +
Sbjct: 398 KGKTFQFLLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLM 457

Query: 183 ITNVVN 200
           +TN V+
Sbjct: 458 LTNGVD 463


>At1g07000.1 68414.m00745 exocyst subunit EXO70 family protein
           similar to leucine zipper protein GI:10177020 from
           [Arabidopsis thaliana] contains Pfam domain PF03081:
           Exo70 exocyst complex subunit;
          Length = 599

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 110 VIVKMLRQDFVEGCAFVGVQRRREETQDNNSGLHLR 3
           + V+M+   F + C+ V   RRRE  +++ S LHLR
Sbjct: 192 IAVRMVAGGFAKECSRVYSSRRREFLEESLSRLHLR 227


>At5g45540.1 68418.m05593 expressed protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594; expression
           supported by MPSS
          Length = 803

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 569 KPSKLATP*AMWSPFLLVRTSMPSSVCA 486
           KPSK     A WSPFLL+    P ++ A
Sbjct: 81  KPSKNRELLAFWSPFLLLHLGGPDTITA 108


>At1g13750.1 68414.m01614 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 613

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 452 NNKVYFKIENTERKQNLALKSELTEMATTWLTG 550
           +NKV F+  N      LAL  E  EM  TW +G
Sbjct: 159 SNKVAFENPNAPVYPRLALGKEWDEMTVTWTSG 191


>At5g52730.1 68418.m06545 heavy-metal-associated domain-containing
           protein  contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 185

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 413 SSRVSWKFIPLWENNKVYFKIENTERKQNLALK 511
           SS   + F+ + +N  V FK+E  ERK+  A+K
Sbjct: 28  SSYKLFHFLKMQQNTNVVFKLEVDERKKKKAMK 60


>At5g52610.1 68418.m06532 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 351

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 216 NKMNCMEYAYQLWCKAPRTSSGIV 287
           N + C+EY  QLW   P T  G++
Sbjct: 95  NGLICVEYMSQLWISNPATRKGVL 118


>At3g31950.1 68416.m04046 hypothetical protein
          Length = 507

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = -2

Query: 297 STGKQSRTMSSEPCTRAGRRTPCSSSCCFVSDCLRHL**AXPCYRCR 157
           S G++  T +  PC   G     +  C + S  + ++     CY CR
Sbjct: 274 SVGRKLATPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCR 320


>At2g29060.1 68415.m03532 scarecrow transcription factor family
           protein 
          Length = 1336

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 353 LAFTLSDNGGVAYGDSKDRTSSRVSWKFIPLWENNK 460
           LA  +S  GG +Y  S   TSS   W F  L ENN+
Sbjct: 116 LAQLVSSPGGSSYASSTTTTSSDSQWSFDCL-ENNR 150


>At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF)
           identical to alpha-glucosidase I (GI:16506680,
           GI:13398928) [Arabidopsis thaliana]
          Length = 852

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 141 ERSKLIYTDNKGXLITNVVNN 203
           E+SK IYT+ +  LI NVV N
Sbjct: 790 EKSKAIYTELRSNLIRNVVRN 810


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,513,681
Number of Sequences: 28952
Number of extensions: 278135
Number of successful extensions: 675
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)