BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0806 (695 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 28 1.5 SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 3.4 SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 26 4.5 SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 4.5 SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 5.9 SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 25 7.8 SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac... 25 7.8 >SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pombe|chr 1|||Manual Length = 710 Score = 27.9 bits (59), Expect = 1.5 Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Frame = -1 Query: 287 SRFLDDNLIAGARS-AIMRAALSMYFKSAARPFPLPIVFVGVLTDINIKS 141 SRF+ + ++ +R+ A+ + + +Y+KS ++ F ++FVG T +++ S Sbjct: 344 SRFIVEMVLLASRNQALKKQRIRLYWKSISKGFFYRVIFVG-FTQMSVLS 392 >SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosaccharomyces pombe|chr 2|||Manual Length = 948 Score = 26.6 bits (56), Expect = 3.4 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = -2 Query: 454 SGVSSPPIRTLSASTRSTIA--VPSAKNSGFDRIWYSTPGLVLARRIFIIISAALTGTV 284 S +S ++T++ S A +PSA + YS V + ++S ++TGTV Sbjct: 56 SNTTSASVQTIAISQTDNAASCIPSASLLSSSVVLYSAKETVTVSSYWSLVSTSVTGTV 114 >SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 903 Score = 26.2 bits (55), Expect = 4.5 Identities = 17/64 (26%), Positives = 33/64 (51%) Frame = -1 Query: 275 DDNLIAGARSAIMRAALSMYFKSAARPFPLPIVFVGVLTDINIKSASRMLSAMFVEKNKF 96 + N+I +A + A S +++ R PL + +GV+T +++ S+ +S + N Sbjct: 400 EPNIILAVCAADVDLANSAALRASRRVDPLGLRTIGVVTKMDLVPPSKAISIL---HNNN 456 Query: 95 LPLH 84 PLH Sbjct: 457 YPLH 460 >SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 194 Score = 26.2 bits (55), Expect = 4.5 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +3 Query: 123 RKHSGSRFNIYIR*HAHEDNR*WERASCRLEVHRERSPHDSGS 251 R+H R ++ R H H + R E RE SP+D GS Sbjct: 153 RRHEPYRTHLS-RHHRHSTTNYHSKRDDRYERRREHSPNDGGS 194 >SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces pombe|chr 1|||Manual Length = 4924 Score = 25.8 bits (54), Expect = 5.9 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -2 Query: 241 SCGLRSLCTSSLQLALSHYLLSSWAC 164 S L ++C S L+ +++ LL+SW C Sbjct: 3550 SAKLSTICRSVLKASVNSALLTSWIC 3575 >SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 495 Score = 25.4 bits (53), Expect = 7.8 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 4/38 (10%) Frame = -1 Query: 542 LNSKYWLSGC----SCRDPVFVHPA*FLNSFLAFWGVF 441 LN KYWLS +P F P FL F G+F Sbjct: 343 LNQKYWLSAVQKNNGVPEPEFRLPMAFLGCFAIMTGMF 380 >SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 165 Score = 25.4 bits (53), Expect = 7.8 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -1 Query: 281 FLDDNLIAGARSAIMRAALSMYF 213 FL+ NLIAG I R ++YF Sbjct: 49 FLESNLIAGKNRIIYRQYATLYF 71 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,006,698 Number of Sequences: 5004 Number of extensions: 64433 Number of successful extensions: 177 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 167 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 177 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 321151040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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