Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0806
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    28   1.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   3.4  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    26   4.5  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    26   4.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.9  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    25   7.8  
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac...    25   7.8  

>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
 Frame = -1

Query: 287 SRFLDDNLIAGARS-AIMRAALSMYFKSAARPFPLPIVFVGVLTDINIKS 141
           SRF+ + ++  +R+ A+ +  + +Y+KS ++ F   ++FVG  T +++ S
Sbjct: 344 SRFIVEMVLLASRNQALKKQRIRLYWKSISKGFFYRVIFVG-FTQMSVLS 392


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -2

Query: 454 SGVSSPPIRTLSASTRSTIA--VPSAKNSGFDRIWYSTPGLVLARRIFIIISAALTGTV 284
           S  +S  ++T++ S     A  +PSA       + YS    V     + ++S ++TGTV
Sbjct: 56  SNTTSASVQTIAISQTDNAASCIPSASLLSSSVVLYSAKETVTVSSYWSLVSTSVTGTV 114


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = -1

Query: 275 DDNLIAGARSAIMRAALSMYFKSAARPFPLPIVFVGVLTDINIKSASRMLSAMFVEKNKF 96
           + N+I    +A +  A S   +++ R  PL +  +GV+T +++   S+ +S +    N  
Sbjct: 400 EPNIILAVCAADVDLANSAALRASRRVDPLGLRTIGVVTKMDLVPPSKAISIL---HNNN 456

Query: 95  LPLH 84
            PLH
Sbjct: 457 YPLH 460


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 123 RKHSGSRFNIYIR*HAHEDNR*WERASCRLEVHRERSPHDSGS 251
           R+H   R ++  R H H       +   R E  RE SP+D GS
Sbjct: 153 RRHEPYRTHLS-RHHRHSTTNYHSKRDDRYERRREHSPNDGGS 194


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 241  SCGLRSLCTSSLQLALSHYLLSSWAC 164
            S  L ++C S L+ +++  LL+SW C
Sbjct: 3550 SAKLSTICRSVLKASVNSALLTSWIC 3575


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
 Frame = -1

Query: 542 LNSKYWLSGC----SCRDPVFVHPA*FLNSFLAFWGVF 441
           LN KYWLS         +P F  P  FL  F    G+F
Sbjct: 343 LNQKYWLSAVQKNNGVPEPEFRLPMAFLGCFAIMTGMF 380


>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 281 FLDDNLIAGARSAIMRAALSMYF 213
           FL+ NLIAG    I R   ++YF
Sbjct: 49  FLESNLIAGKNRIIYRQYATLYF 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,698
Number of Sequences: 5004
Number of extensions: 64433
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)