Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0806
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55023| Best HMM Match : UDPG_MGDP_dh (HMM E-Value=0)               110   1e-24
SB_50986| Best HMM Match : UDPG_MGDP_dh (HMM E-Value=0)                54   1e-07
SB_49395| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06)           29   3.6  
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)                    29   4.8  
SB_595| Best HMM Match : CH (HMM E-Value=0)                            29   4.8  
SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_55023| Best HMM Match : UDPG_MGDP_dh (HMM E-Value=0)
          Length = 354

 Score =  110 bits (264), Expect = 1e-24
 Identities = 53/90 (58%), Positives = 65/90 (72%)
 Frame = +3

Query: 237 HDSGSGTSNKIVVEKSTVPVKAAEIIMKILRANTKPGVEYQILSNPEFLAEGTAIVDLVE 416
           H +      KI+VEKSTVPV+AAE I +IL AN     ++ +LSNPEFLAEGTAI DL+E
Sbjct: 93  HIADVAEGGKIIVEKSTVPVRAAESITRILSANADK--KFHVLSNPEFLAEGTAIKDLME 150

Query: 417 AERVLIGGEDTPEGQKAVQELCWVYEHWIP 506
            +RVLIGGE T EG  ++  L WVY+HWIP
Sbjct: 151 PDRVLIGGEQTKEGLLSIDALAWVYQHWIP 180



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 41/68 (60%), Positives = 50/68 (73%)
 Frame = +1

Query: 52  YEPGLDDVVRECRGKNLFFSTNIAESIREADLIFISVNTPTKTIGNGKGRAADLKYIESA 231
           ++PGL +VVRECRG+NLFFST+I  +I++ADLIFI             GRA DLKYIESA
Sbjct: 43  FQPGLSEVVRECRGRNLFFSTDIDTAIKDADLIFIC------------GRAPDLKYIESA 90

Query: 232 ARMIADLA 255
           AR IAD+A
Sbjct: 91  ARHIADVA 98



 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 34/42 (80%), Positives = 37/42 (88%)
 Frame = +2

Query: 503 PGKNILTTNTWSSELSKLAANAFLAQRISSINSLSAVXEATG 628
           P   I+ TNTWSSELSKLAANAFLAQRISSINS+SA+ EATG
Sbjct: 180 PRDKIIKTNTWSSELSKLAANAFLAQRISSINSMSAICEATG 221



 Score = 32.3 bits (70), Expect = 0.39
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +1

Query: 631 DVSXVARAVGRDSRIGPKFLE 693
           DVS VA A+G DSRIG +FL+
Sbjct: 223 DVSEVAHAIGMDSRIGSQFLQ 243


>SB_50986| Best HMM Match : UDPG_MGDP_dh (HMM E-Value=0)
          Length = 354

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
 Frame = +3

Query: 267 IVVEKSTVPVKAAEIIMKILRANT---KPGVEYQILSNPEFLAEGTAIVDLVEAERVLIG 437
           IVV+KSTVP+  A+ +   ++      K  +++ ++SNPEFL EG AI D ++ +RV+IG
Sbjct: 28  IVVDKSTVPIGTADKVKATIQEELNKRKMSIKFDVVSNPEFLKEGDAINDFMKPDRVVIG 87

Query: 438 GE 443
            E
Sbjct: 88  AE 89


>SB_49395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = +2

Query: 509 KNILTTNTWSSELSKLAANAFLAQRISSINSLSAVXEATG 628
           + I+  +  S+EL+K AAN FLA +IS +N ++ + E  G
Sbjct: 51  ERIIVMDRRSAELTKYAANCFLATKISFMNEMANLSEVFG 90


>SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06)
          Length = 127

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 25  QWNSDKLPIYEPGLDDVVRECRGKNLFFSTN 117
           +W+++K  +Y P +  V+R C G  + F  N
Sbjct: 67  KWSAEKCALYIPNMHYVIRNCCGLRIVFYEN 97


>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
          Length = 646

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 369 NPEFLAEGTAIVDLVEAERVLIGGEDTPEGQKAVQELCWVYEHWIP---ARTS*QPILG 536
           NP F  EGT+I  + + E + I  ++  + +  V E+CW    W+P    R   Q ILG
Sbjct: 546 NPIFKCEGTSIPTVKKLELLGITIDNQLKFEGQVAEICWKV-MWLPQVKKRLQEQKILG 603


>SB_595| Best HMM Match : CH (HMM E-Value=0)
          Length = 905

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 369 NPEFLAEGTAIVDLVEAERVLIGGEDTPEGQKAVQELCWVYEHWIP---ARTS*QPILG 536
           NP F  EGT+I  + + E + I  ++  + +  V E+CW    W+P    R   Q ILG
Sbjct: 19  NPIFKCEGTSIPTVKKLELLGITIDNQLKFEGQVAEICWKV-MWLPQVKKRLQEQKILG 76


>SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 751

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +3

Query: 273 VEKSTVPVKAAEIIMKILRANTKPGVEYQILSNPEFLAEGTAIVDLVEAERVLIGGEDTP 452
           VEK    VK  + + K+  A+   GVE++    PE L + T  VD V+ +  ++    T 
Sbjct: 140 VEKLQEAVKEIQSLQKVYSASPIFGVEFETEDKPEALDKIT--VDPVQDDIEIVNEGSTD 197

Query: 453 EGQKAVQELCWVY 491
               ++ EL  +Y
Sbjct: 198 AFAVSIPELMGMY 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,611,617
Number of Sequences: 59808
Number of extensions: 491091
Number of successful extensions: 1108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)