Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0806
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39320.1 68418.m04761 UDP-glucose 6-dehydrogenase, putative v...   132   2e-31
At5g15490.1 68418.m01813 UDP-glucose 6-dehydrogenase, putative v...   132   2e-31
At3g29360.1 68416.m03687 UDP-glucose 6-dehydrogenase, putative v...   131   4e-31
At1g26570.1 68414.m03237 UDP-glucose 6-dehydrogenase, putative s...   130   9e-31
At1g07650.1 68414.m00821 leucine-rich repeat transmembrane prote...    30   1.7  
At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin ...    29   2.9  
At5g65910.1 68418.m08296 BSD domain-containing protein contains ...    29   3.9  
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    28   6.8  

>At5g39320.1 68418.m04761 UDP-glucose 6-dehydrogenase, putative very
           strong similarity to SP|Q96558 UDP-glucose
           6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
           (UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
           profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
           family NAD binding domain, PF00984:
           UDP-glucose/GDP-mannose dehydrogenase family central
           domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
           family UDP binding domain
          Length = 480

 Score =  132 bits (320), Expect = 2e-31
 Identities = 58/83 (69%), Positives = 72/83 (86%)
 Frame = +1

Query: 7   SEERIKQWNSDKLPIYEPGLDDVVRECRGKNLFFSTNIAESIREADLIFISVNTPTKTIG 186
           S  RI  WNSD+LPIYEPGLDD+V++CRGKNLFFST++ + +READ++F+SVNTPTKT G
Sbjct: 35  SVPRINAWNSDQLPIYEPGLDDIVKQCRGKNLFFSTDVEKHVREADIVFVSVNTPTKTTG 94

Query: 187 NGKGRAADLKYIESAARMIADLA 255
            G G+AADL Y ESAARMIAD++
Sbjct: 95  LGAGKAADLTYWESAARMIADVS 117



 Score =  115 bits (276), Expect = 3e-26
 Identities = 58/83 (69%), Positives = 67/83 (80%)
 Frame = +3

Query: 258 SNKIVVEKSTVPVKAAEIIMKILRANTKPGVEYQILSNPEFLAEGTAIVDLVEAERVLIG 437
           S+KIVVEKSTVPVK AE I KIL  N+K G+++QILSNPEFLAEGTAI DL   +RVLIG
Sbjct: 119 SDKIVVEKSTVPVKTAEAIEKILMHNSK-GIKFQILSNPEFLAEGTAIADLFNPDRVLIG 177

Query: 438 GEDTPEGQKAVQELCWVYEHWIP 506
           G +TPEG KAVQ L  VY +W+P
Sbjct: 178 GRETPEGFKAVQTLKEVYANWVP 200



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 30/42 (71%), Positives = 37/42 (88%)
 Frame = +2

Query: 503 PGKNILTTNTWSSELSKLAANAFLAQRISSINSLSAVXEATG 628
           P   I+TTN WS+ELSKLAANAFLAQRISS+N++SA+ E+TG
Sbjct: 200 PEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCESTG 241



 Score = 31.1 bits (67), Expect = 0.73
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +1

Query: 619 SNRCDVSXVARAVGRDSRIGPKFL 690
           S   DV+ V+ AVG DSRIG KFL
Sbjct: 239 STGADVTQVSYAVGTDSRIGSKFL 262


>At5g15490.1 68418.m01813 UDP-glucose 6-dehydrogenase, putative very
           strong similarity to SP|Q96558 UDP-glucose
           6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
           (UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
           profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
           family NAD binding domain, PF00984:
           UDP-glucose/GDP-mannose dehydrogenase family central
           domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
           family UDP binding domain
          Length = 480

 Score =  132 bits (319), Expect = 2e-31
 Identities = 59/83 (71%), Positives = 72/83 (86%)
 Frame = +1

Query: 7   SEERIKQWNSDKLPIYEPGLDDVVRECRGKNLFFSTNIAESIREADLIFISVNTPTKTIG 186
           S  RI  WNSD+LPIYEPGLDDVV++CRGKNLFFST++ + +READ++F+SVNTPTKT G
Sbjct: 35  SVPRINAWNSDQLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRG 94

Query: 187 NGKGRAADLKYIESAARMIADLA 255
            G G+AADL Y ESAARMIAD++
Sbjct: 95  LGAGKAADLTYWESAARMIADVS 117



 Score =  105 bits (251), Expect = 4e-23
 Identities = 54/83 (65%), Positives = 64/83 (77%)
 Frame = +3

Query: 258 SNKIVVEKSTVPVKAAEIIMKILRANTKPGVEYQILSNPEFLAEGTAIVDLVEAERVLIG 437
           S+KIVVEKSTVPVK AE I KIL  N+K G+++QILSNPEFLAEGTAI DL   +RVLIG
Sbjct: 119 SDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIEDLFMPDRVLIG 177

Query: 438 GEDTPEGQKAVQELCWVYEHWIP 506
           G +T EG  AV+ L  +Y  W+P
Sbjct: 178 GRETTEGFAAVKALKDIYAQWVP 200



 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 32/42 (76%), Positives = 38/42 (90%)
 Frame = +2

Query: 503 PGKNILTTNTWSSELSKLAANAFLAQRISSINSLSAVXEATG 628
           P + ILTTN WS+ELSKLAANAFLAQRISS+N++SA+ EATG
Sbjct: 200 PEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241



 Score = 33.9 bits (74), Expect = 0.10
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +1

Query: 631 DVSXVARAVGRDSRIGPKFL 690
           +VS V+ AVG+DSRIGPKFL
Sbjct: 243 NVSEVSYAVGKDSRIGPKFL 262


>At3g29360.1 68416.m03687 UDP-glucose 6-dehydrogenase, putative very
           strong similarity to SP|Q96558 UDP-glucose
           6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
           (UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
           profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
           family NAD binding domain, PF00984:
           UDP-glucose/GDP-mannose dehydrogenase family central
           domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
           family UDP binding domain
          Length = 480

 Score =  131 bits (317), Expect = 4e-31
 Identities = 59/83 (71%), Positives = 71/83 (85%)
 Frame = +1

Query: 7   SEERIKQWNSDKLPIYEPGLDDVVRECRGKNLFFSTNIAESIREADLIFISVNTPTKTIG 186
           S  RI  WNSD LPIYEPGLDDVV++CRGKNLFFST++ + +READ++F+SVNTPTKT G
Sbjct: 35  SVPRINAWNSDTLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRG 94

Query: 187 NGKGRAADLKYIESAARMIADLA 255
            G G+AADL Y ESAARMIAD++
Sbjct: 95  LGAGKAADLTYWESAARMIADVS 117



 Score =  116 bits (280), Expect = 1e-26
 Identities = 59/83 (71%), Positives = 67/83 (80%)
 Frame = +3

Query: 258 SNKIVVEKSTVPVKAAEIIMKILRANTKPGVEYQILSNPEFLAEGTAIVDLVEAERVLIG 437
           S+KIVVEKSTVPVK AE I KIL  N+K G+++QILSNPEFLAEGTAI DL   +RVLIG
Sbjct: 119 SDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIKDLFNPDRVLIG 177

Query: 438 GEDTPEGQKAVQELCWVYEHWIP 506
           G +TPEG KAVQ L  VY HW+P
Sbjct: 178 GRETPEGFKAVQTLKNVYAHWVP 200



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = +2

Query: 503 PGKNILTTNTWSSELSKLAANAFLAQRISSINSLSAVXEATG 628
           P   I+TTN WS+ELSKLAANAFLAQRISS+N++SA+ EATG
Sbjct: 200 PEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241



 Score = 33.5 bits (73), Expect = 0.14
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 631 DVSXVARAVGRDSRIGPKFL 690
           DV+ V+ AVG DSRIGPKFL
Sbjct: 243 DVTQVSYAVGTDSRIGPKFL 262


>At1g26570.1 68414.m03237 UDP-glucose 6-dehydrogenase, putative
           strong similarity to SP|Q96558 UDP-glucose
           6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
           (UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
           profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
           family NAD binding domain, PF00984:
           UDP-glucose/GDP-mannose dehydrogenase family central
           domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
           family UDP binding domain
          Length = 481

 Score =  130 bits (314), Expect = 9e-31
 Identities = 57/88 (64%), Positives = 75/88 (85%)
 Frame = +1

Query: 7   SEERIKQWNSDKLPIYEPGLDDVVRECRGKNLFFSTNIAESIREADLIFISVNTPTKTIG 186
           SE RI  WNSD+LPIYEPGL+DVV++CRGKNLFFST++ + + E+D++F+SVNTPTKT G
Sbjct: 35  SEPRINAWNSDRLPIYEPGLEDVVKQCRGKNLFFSTDVEKHVFESDIVFVSVNTPTKTQG 94

Query: 187 NGKGRAADLKYIESAARMIADLAPAIRL 270
            G G+AADL Y ESAARMIAD++ + ++
Sbjct: 95  LGAGKAADLTYWESAARMIADVSKSSKI 122



 Score =  114 bits (274), Expect = 6e-26
 Identities = 57/83 (68%), Positives = 66/83 (79%)
 Frame = +3

Query: 258 SNKIVVEKSTVPVKAAEIIMKILRANTKPGVEYQILSNPEFLAEGTAIVDLVEAERVLIG 437
           S+KIVVEKSTVPV+ AE I KIL  N+K G+E+QILSNPEFLAEGTAI DL   +RVLIG
Sbjct: 119 SSKIVVEKSTVPVRTAEAIEKILTHNSK-GIEFQILSNPEFLAEGTAIKDLYNPDRVLIG 177

Query: 438 GEDTPEGQKAVQELCWVYEHWIP 506
           G DT  GQKA++ L  VY HW+P
Sbjct: 178 GRDTAAGQKAIKALRDVYAHWVP 200



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 30/42 (71%), Positives = 37/42 (88%)
 Frame = +2

Query: 503 PGKNILTTNTWSSELSKLAANAFLAQRISSINSLSAVXEATG 628
           P + I+ TN WS+ELSKLAANAFLAQRISS+N++SA+ EATG
Sbjct: 200 PVEQIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241



 Score = 34.3 bits (75), Expect = 0.078
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 631 DVSXVARAVGRDSRIGPKFL 690
           DV+ VA AVG D+RIGPKFL
Sbjct: 243 DVTQVAHAVGTDTRIGPKFL 262


>At1g07650.1 68414.m00821 leucine-rich repeat transmembrane protein
            kinase, putative similar to GB:AAC50043 from [Arabidopsis
            thaliana] (Plant Mol. Biol. 37 (4), 587-596 (1998))
          Length = 1014

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 494  TLDPGKNILTTNTWSSELSKLAANAFLAQRISSINSLSAVXEATGVM 634
            T++P    L  + W +ELS+  + +    R +S NSL    E TG++
Sbjct: 967  TVNPKLKALRNHFWQNELSRSLSFSTSGPRTASANSLVDAEEKTGLL 1013


>At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin
           family protein / PAN domain-containing protein contains
           Pfam profiles: PF01453 lectin (probable mannose
           binding), PF00024 PAN domain
          Length = 764

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 399 IVDLVEAERVLIGGEDTPEGQKAVQELCWVYEHWIPARTS*QPILGVQSCLNLQQM 566
           + D  +    LI G   PEG   V E  WVY  WI  R       G++ C +++++
Sbjct: 652 VEDFGKTVLALITGRYEPEG--VVSE--WVYREWIGGRKETVVDKGLEGCFDVEEL 703


>At5g65910.1 68418.m08296 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 432

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 222 RERSPHDSGSGTSNKIVVEKSTVPVKAAEIIMKILRANTKPGVE 353
           R + P ++GS  +N ++VE  TVP       +KI+       VE
Sbjct: 254 RSKLPVEAGSSEANTVIVEPLTVPPSPETAAVKIVNPVESSDVE 297


>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 96  KFIFLNEHRRKHSGSRFNIYIR*HAHEDNR*WERASCRLEVHRERSPHDSGSG 254
           KFI  +++R+   G  + +      HE  +       R E  + RSPH +G G
Sbjct: 362 KFIVKDQNRQHGGGEGYEMVFEGDVHETPKHNSHERERSEKIQRRSPHGNGEG 414


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,725,495
Number of Sequences: 28952
Number of extensions: 339759
Number of successful extensions: 953
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)