Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0805
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    34   0.018
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    29   0.67 
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   4.7  
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    25   6.2  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   8.2  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   8.2  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 33.9 bits (74), Expect = 0.018
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +1

Query: 88  RLLXHKIRNLEKRKSKLT-SYRD-LQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSNKL 261
           R L H++ +L+  +  L   + D ++K   E+++   + + K DE+ ++++   +L  K+
Sbjct: 108 RRLSHEVNDLQTDRENLKHQFEDQIEKLNSEISNQNSLILQKKDELEKSIQRCSELEEKI 167

Query: 262 LI*QSLQSVRQK 297
              +S QS+ Q+
Sbjct: 168 NSLESAQSIEQE 179


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -1

Query: 322 TQASFLACFFASRSEEIAISVTCLRDLLQIQGFGQLHHI*QLQLFDQNLALFQLSAGHDM 143
           T  +F A  F + S   +I++   +DL  IQ    L +   L L +  L L  L   H  
Sbjct: 629 TSVNF-APIFTTPSRVRSITLLLPKDLANIQPSDLLFYAVLLVLINGKLVLLSLKKQHSK 687

Query: 142 MLVYSC--VFPNYEFY 101
            L+Y C  +  + EFY
Sbjct: 688 ELLYQCSMLAGDVEFY 703


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -1

Query: 565 RGVLQLLLFEGETRLXFXINSCLGV--TSGYKSXKIFKSSS 449
           RG+ +LLLFEG+ +  + +N  + +    G+++ ++ +  S
Sbjct: 568 RGLKELLLFEGDVKNTYGLNFTINLKAVEGFRTVELKEGGS 608


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 115 LEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 234
           LEK KS L  +R+     K+L    +  V KYD+    ++
Sbjct: 8   LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIK 47


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 233 SRVWATSSYLATATF*S-EFSSFPAFCRSRYDVSLLLRFSKLRILWXNNRHNLS 75
           +++W T  +L++  + + E    P++C+ R  ++ L R  KLR+   +  H L+
Sbjct: 449 TQLWVTLWFLSSLQYYAYECVIKPSYCKLRESLTELYRTQKLRMQDCSQLHALT 502


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 295  KNKLKRKPGFVMQQRPTK*KKFYLF 369
            KN+ + K  F +Q+RP K  +++LF
Sbjct: 1008 KNQQRNKEKFRIQKRPNKKYRYHLF 1032


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,840
Number of Sequences: 5004
Number of extensions: 37023
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)