BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0805 (589 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 34 0.018 SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 29 0.67 SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 26 4.7 SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 25 6.2 SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 25 8.2 SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 25 8.2 >SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 750 Score = 33.9 bits (74), Expect = 0.018 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Frame = +1 Query: 88 RLLXHKIRNLEKRKSKLT-SYRD-LQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSNKL 261 R L H++ +L+ + L + D ++K E+++ + + K DE+ ++++ +L K+ Sbjct: 108 RRLSHEVNDLQTDRENLKHQFEDQIEKLNSEISNQNSLILQKKDELEKSIQRCSELEEKI 167 Query: 262 LI*QSLQSVRQK 297 +S QS+ Q+ Sbjct: 168 NSLESAQSIEQE 179 >SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |Schizosaccharomyces pombe|chr 1|||Manual Length = 1052 Score = 28.7 bits (61), Expect = 0.67 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Frame = -1 Query: 322 TQASFLACFFASRSEEIAISVTCLRDLLQIQGFGQLHHI*QLQLFDQNLALFQLSAGHDM 143 T +F A F + S +I++ +DL IQ L + L L + L L L H Sbjct: 629 TSVNF-APIFTTPSRVRSITLLLPKDLANIQPSDLLFYAVLLVLINGKLVLLSLKKQHSK 687 Query: 142 MLVYSC--VFPNYEFY 101 L+Y C + + EFY Sbjct: 688 ELLYQCSMLAGDVEFY 703 >SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces pombe|chr 2|||Manual Length = 807 Score = 25.8 bits (54), Expect = 4.7 Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Frame = -1 Query: 565 RGVLQLLLFEGETRLXFXINSCLGV--TSGYKSXKIFKSSS 449 RG+ +LLLFEG+ + + +N + + G+++ ++ + S Sbjct: 568 RGLKELLLFEGDVKNTYGLNFTINLKAVEGFRTVELKEGGS 608 >SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizosaccharomyces pombe|chr 3|||Manual Length = 388 Score = 25.4 bits (53), Expect = 6.2 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +1 Query: 115 LEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 234 LEK KS L +R+ K+L + V KYD+ ++ Sbjct: 8 LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIK 47 >SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 577 Score = 25.0 bits (52), Expect = 8.2 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = -3 Query: 233 SRVWATSSYLATATF*S-EFSSFPAFCRSRYDVSLLLRFSKLRILWXNNRHNLS 75 +++W T +L++ + + E P++C+ R ++ L R KLR+ + H L+ Sbjct: 449 TQLWVTLWFLSSLQYYAYECVIKPSYCKLRESLTELYRTQKLRMQDCSQLHALT 502 >SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1032 Score = 25.0 bits (52), Expect = 8.2 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +1 Query: 295 KNKLKRKPGFVMQQRPTK*KKFYLF 369 KN+ + K F +Q+RP K +++LF Sbjct: 1008 KNQQRNKEKFRIQKRPNKKYRYHLF 1032 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,110,840 Number of Sequences: 5004 Number of extensions: 37023 Number of successful extensions: 115 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 115 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 254167452 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -