Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0805
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   4e-10
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)                     28   6.5  
SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          27   8.6  

>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 34/82 (41%), Positives = 47/82 (57%)
 Frame = +1

Query: 91  LLXHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSNKLLI* 270
           L+  K+RNLEKRK KL  Y+    +G+ELN+DQK A+A  D V   L+ A+DL  +    
Sbjct: 27  LVEKKVRNLEKRKLKLDGYKKQMDSGQELNADQKAAIANLDVVEMNLDMAKDLLKQFQQM 86

Query: 271 QSLQSVRQKNKLKRKPGFVMQQ 336
            S +  RQ+ K  R+     QQ
Sbjct: 87  HS-EYQRQQKKQARRDQVAQQQ 107



 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 27/61 (44%), Positives = 36/61 (59%)
 Frame = +3

Query: 324 RYAAETNKIKEVLLILDCLMQMGSADARTDFINGTNGAAKLTEDDLKILXDLYPEVTPKH 503
           ++ A+  K+ EVL  L  LM   S D RTDF+NGTNGA  +TED    + + Y  +TP  
Sbjct: 109 QHNADVLKVNEVLE-LQHLMDSLSEDVRTDFLNGTNGAVVVTEDQFVQIDEFYKLITPDE 167

Query: 504 E 506
           E
Sbjct: 168 E 168


>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 22/92 (23%), Positives = 49/92 (53%)
 Frame = +1

Query: 22   LMQNLKSRPLRRIRIHQFDKL*RLLXHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAV 201
            L + L +R     ++H+     +    K+ NL+ + SKL +  + Q+A K++ +  +V+ 
Sbjct: 869  LEETLATRHSTANKVHELQVQLKAKDDKVNNLQAKISKLEADMNEQQASKDITAQDRVS- 927

Query: 202  AKYDEVAQTLEFARDLSNKLLI*QSLQSVRQK 297
                E+   L+ +R+  +KL   + ++S+R+K
Sbjct: 928  ----ELKDLLKVSRESESKLQ--ERIESLREK 953


>SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +1

Query: 103 KIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 234
           KIRNL+K+  ++   +  QKAGK+L  +Q   +   D + + ++
Sbjct: 67  KIRNLKKKLRQIEELKTQQKAGKQLEVNQLEKLKNEDALLKEIK 110


>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
          Length = 1187

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/72 (23%), Positives = 36/72 (50%)
 Frame = +1

Query: 157  QKAGKELNSDQKVAVAKYDEVAQTLEFARDLSNKLLI*QSLQSVRQKNKLKRKPGFVMQQ 336
            ++  +EL  + ++ V+ YDE+ ++++  R+   +LL     +  RQ+ + + K    M +
Sbjct: 889  EQTKEELGEEVEMLVSDYDEILRSVDDERNRVQRLLDEDEAKRKRQREEEEAKRKKKMDE 948

Query: 337  RPTK*KKFYLFW 372
               K KK    W
Sbjct: 949  EKAK-KKELAAW 959


>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -1

Query: 454 SSVNLAAPFVPFMKSVLASALPICIRQSRISKTSFILLVSA 332
           S++N++ PF+P+   V+    P  +RQ  I K  FI LVSA
Sbjct: 91  STLNMS-PFIPY---VIRPKGPRLLRQGTIMKAGFIGLVSA 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,332,537
Number of Sequences: 59808
Number of extensions: 252006
Number of successful extensions: 513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)