Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0803
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    61   2e-10
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    27   3.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.6  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   8.7  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    25   8.7  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 31/42 (73%), Positives = 32/42 (76%)
 Frame = -3

Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQE 567
           AMFR + FL        MDEMEFTEAESNMNDLVSEYQQYQE
Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQE 427


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +1

Query: 616 ASVNSISSMALAGGTNARK----PCGLNIAGELFRDALVTXP 729
           A V+++  M +AGG N  K    P  L++AG  FR   V  P
Sbjct: 400 AKVSALQQMLIAGGVNPLKVSVIPTLLHVAGYSFRQGDVFPP 441


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 186  VSNFDPPFCFCCTYYVNKK 242
            VSN  PPF  C TY ++K+
Sbjct: 3032 VSNIGPPFPNCSTYILSKE 3050


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 363 KLPVMTNYLNEHNLFNTXLDIPPGLVE 283
           K+    ++L EHN+FNT L    G+V+
Sbjct: 577 KITDCLSFLLEHNIFNTFLVYNEGIVK 603


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = -3

Query: 188 YLPTLIQRGHLCHFIFVAQSV*SLDVAMNAKRLIVTASVTEVLLAMIINNL-MYIIKI 18
           YLP L     + HFI  ++ + S+D + N++ L    ++T+  ++ ++N L + ++KI
Sbjct: 262 YLPLLYAEPGV-HFIESSEVLKSMDPSDNSRYLSFHQNITKDSISRLLNGLPLNLVKI 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,202
Number of Sequences: 5004
Number of extensions: 48550
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)