BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0803 (751 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 61 2e-10 SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 27 3.8 SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 6.6 SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.7 SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 25 8.7 >SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 60.9 bits (141), Expect = 2e-10 Identities = 31/42 (73%), Positives = 32/42 (76%) Frame = -3 Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQE 567 AMFR + FL MDEMEFTEAESNMNDLVSEYQQYQE Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQE 427 >SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosaccharomyces pombe|chr 1|||Manual Length = 558 Score = 26.6 bits (56), Expect = 3.8 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Frame = +1 Query: 616 ASVNSISSMALAGGTNARK----PCGLNIAGELFRDALVTXP 729 A V+++ M +AGG N K P L++AG FR V P Sbjct: 400 AKVSALQQMLIAGGVNPLKVSVIPTLLHVAGYSFRQGDVFPP 441 >SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces pombe|chr 1|||Manual Length = 4924 Score = 25.8 bits (54), Expect = 6.6 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 Query: 186 VSNFDPPFCFCCTYYVNKK 242 VSN PPF C TY ++K+ Sbjct: 3032 VSNIGPPFPNCSTYILSKE 3050 >SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 1202 Score = 25.4 bits (53), Expect = 8.7 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -2 Query: 363 KLPVMTNYLNEHNLFNTXLDIPPGLVE 283 K+ ++L EHN+FNT L G+V+ Sbjct: 577 KITDCLSFLLEHNIFNTFLVYNEGIVK 603 >SPBC1A4.06c |||mitochondrial matrix protein import protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 383 Score = 25.4 bits (53), Expect = 8.7 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Frame = -3 Query: 188 YLPTLIQRGHLCHFIFVAQSV*SLDVAMNAKRLIVTASVTEVLLAMIINNL-MYIIKI 18 YLP L + HFI ++ + S+D + N++ L ++T+ ++ ++N L + ++KI Sbjct: 262 YLPLLYAEPGV-HFIESSEVLKSMDPSDNSRYLSFHQNITKDSISRLLNGLPLNLVKI 318 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,641,202 Number of Sequences: 5004 Number of extensions: 48550 Number of successful extensions: 136 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 130 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 135 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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