Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0803
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)                     61   8e-10
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)                     61   8e-10
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)                     61   8e-10
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)                 57   1e-08
SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)             57   1e-08
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)                     34   0.11 
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)                   33   0.33 
SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)                 28   7.0  

>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 31/44 (70%), Positives = 33/44 (75%)
 Frame = -3

Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561
           AMFR + FL        MDEMEFTEAESNMNDLVSEYQQYQ+ T
Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429


>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 391

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 31/44 (70%), Positives = 33/44 (75%)
 Frame = -3

Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561
           AMFR + FL        MDEMEFTEAESNMNDLVSEYQQYQ+ T
Sbjct: 332 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 374


>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 31/44 (70%), Positives = 33/44 (75%)
 Frame = -3

Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561
           AMFR + FL        MDEMEFTEAESNMNDLVSEYQQYQ+ T
Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429


>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
          Length = 747

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 28/42 (66%), Positives = 32/42 (76%)
 Frame = -3

Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQE 567
           AMFR + FL        MDEMEFTEAESNM+DL++EYQQYQE
Sbjct: 152 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMHDLIAEYQQYQE 192


>SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)
          Length = 271

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 28/42 (66%), Positives = 32/42 (76%)
 Frame = -3

Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQE 567
           AMFR + FL        MDEMEFTEAESNM+DL++EYQQYQE
Sbjct: 214 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMHDLIAEYQQYQE 254


>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 629

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 12/20 (60%), Positives = 18/20 (90%)
 Frame = -3

Query: 626 FTEAESNMNDLVSEYQQYQE 567
           +  A+SN+NDL+SEYQQY++
Sbjct: 256 YFSADSNLNDLISEYQQYED 275


>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
          Length = 375

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -3

Query: 689 MFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQE 567
           MFR + FL        MD  +F EA++++ DL+S YQQ ++
Sbjct: 293 MFRRRAFLHWYTE-EGMDSQQFEEADNDILDLISTYQQCED 332


>SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)
          Length = 566

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = -2

Query: 204 ADQNSIPTNADSTRTPVPFYFCCTECIKFGCCHERQTFNCDGFSNRSFVSDDNQ 43
           A QN       S   PV    CC    ++   H + T N     +R  V DDNQ
Sbjct: 489 APQNQHEDQRQSFHPPVLSAGCCIYSFQYTVTHIKGTDNASDVLSRLPVGDDNQ 542


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,204,223
Number of Sequences: 59808
Number of extensions: 383584
Number of successful extensions: 812
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)