BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0803 (751 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 61 8e-10 SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 61 8e-10 SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 61 8e-10 SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34) 57 1e-08 SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28) 57 1e-08 SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 34 0.11 SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) 33 0.33 SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039) 28 7.0 >SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) Length = 446 Score = 61.3 bits (142), Expect = 8e-10 Identities = 31/44 (70%), Positives = 33/44 (75%) Frame = -3 Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561 AMFR + FL MDEMEFTEAESNMNDLVSEYQQYQ+ T Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 >SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) Length = 391 Score = 61.3 bits (142), Expect = 8e-10 Identities = 31/44 (70%), Positives = 33/44 (75%) Frame = -3 Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561 AMFR + FL MDEMEFTEAESNMNDLVSEYQQYQ+ T Sbjct: 332 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 374 >SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) Length = 446 Score = 61.3 bits (142), Expect = 8e-10 Identities = 31/44 (70%), Positives = 33/44 (75%) Frame = -3 Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561 AMFR + FL MDEMEFTEAESNMNDLVSEYQQYQ+ T Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 >SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34) Length = 747 Score = 57.2 bits (132), Expect = 1e-08 Identities = 28/42 (66%), Positives = 32/42 (76%) Frame = -3 Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQE 567 AMFR + FL MDEMEFTEAESNM+DL++EYQQYQE Sbjct: 152 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMHDLIAEYQQYQE 192 >SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28) Length = 271 Score = 57.2 bits (132), Expect = 1e-08 Identities = 28/42 (66%), Positives = 32/42 (76%) Frame = -3 Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQE 567 AMFR + FL MDEMEFTEAESNM+DL++EYQQYQE Sbjct: 214 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMHDLIAEYQQYQE 254 >SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) Length = 629 Score = 34.3 bits (75), Expect = 0.11 Identities = 12/20 (60%), Positives = 18/20 (90%) Frame = -3 Query: 626 FTEAESNMNDLVSEYQQYQE 567 + A+SN+NDL+SEYQQY++ Sbjct: 256 YFSADSNLNDLISEYQQYED 275 >SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) Length = 375 Score = 32.7 bits (71), Expect = 0.33 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = -3 Query: 689 MFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQE 567 MFR + FL MD +F EA++++ DL+S YQQ ++ Sbjct: 293 MFRRRAFLHWYTE-EGMDSQQFEEADNDILDLISTYQQCED 332 >SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039) Length = 566 Score = 28.3 bits (60), Expect = 7.0 Identities = 17/54 (31%), Positives = 21/54 (38%) Frame = -2 Query: 204 ADQNSIPTNADSTRTPVPFYFCCTECIKFGCCHERQTFNCDGFSNRSFVSDDNQ 43 A QN S PV CC ++ H + T N +R V DDNQ Sbjct: 489 APQNQHEDQRQSFHPPVLSAGCCIYSFQYTVTHIKGTDNASDVLSRLPVGDDNQ 542 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,204,223 Number of Sequences: 59808 Number of extensions: 383584 Number of successful extensions: 812 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 725 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 806 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2034222073 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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