Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0803
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   1.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   7.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   7.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.3  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 258 LTKIDTFYLHNMCNRNKMADQNSIPTNADSTR 163
           LTKID ++LH M N   + D   +  N D T+
Sbjct: 273 LTKIDKWFLHKMKN---IIDYYLVLENTDHTK 301


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 130 LCATKIKWHRCP 165
           LC T   WH CP
Sbjct: 466 LCNTLHHWHHCP 477


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = +2

Query: 80  PSQLNVWRSWQHPNFIHSVQQ 142
           P+    WR W+ PN +  + +
Sbjct: 856 PAVYEDWRHWKFPNLVEVLDE 876


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 747 NSTRXPXXCYKRISEQFPXY 688
           N+T  P  CY+   E FP +
Sbjct: 91  NATVLPNSCYQERYEYFPGF 110


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 747 NSTRXPXXCYKRISEQFPXY 688
           N+T  P  CY+   E FP +
Sbjct: 91  NATVLPNSCYQERYEYFPGF 110


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 746 TPPAIPGXVTSASRNSSPAMF 684
           T P+ PG  +S+   SSP+ F
Sbjct: 79  TSPSYPGGGSSSPSPSSPSSF 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,644
Number of Sequences: 438
Number of extensions: 3591
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)