Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0803
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near...    61   7e-10
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near...    61   7e-10
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide...    61   7e-10
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden...    61   7e-10
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t...    61   7e-10
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden...    61   7e-10
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden...    60   2e-09
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden...    60   2e-09
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden...    60   2e-09
At3g50010.1 68416.m05468 DC1 domain-containing protein contains ...    28   5.8  

>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
           identical to SP|P29512 Tubulin beta-2/beta-3 chain
           {Arabidopsis thaliana}
          Length = 450

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 31/44 (70%), Positives = 33/44 (75%)
 Frame = -3

Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561
           AMFR + FL        MDEMEFTEAESNMNDLVSEYQQYQ+ T
Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429


>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
           identical to SP|P29512 Tubulin beta-2/beta-3 chain
           {Arabidopsis thaliana}
          Length = 450

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 31/44 (70%), Positives = 33/44 (75%)
 Frame = -3

Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561
           AMFR + FL        MDEMEFTEAESNMNDLVSEYQQYQ+ T
Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429


>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
           identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
           thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
          Length = 449

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 31/44 (70%), Positives = 33/44 (75%)
 Frame = -3

Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561
           AMFR + FL        MDEMEFTEAESNMNDLVSEYQQYQ+ T
Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429


>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
           identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
           thaliana}
          Length = 449

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 31/44 (70%), Positives = 33/44 (75%)
 Frame = -3

Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561
           AMFR + FL        MDEMEFTEAESNMNDLVSEYQQYQ+ T
Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429


>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
           GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
           thaliana}
          Length = 449

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 31/44 (70%), Positives = 33/44 (75%)
 Frame = -3

Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561
           AMFR + FL        MDEMEFTEAESNMNDLVSEYQQYQ+ T
Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429


>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
           identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
           thaliana}
          Length = 447

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 31/44 (70%), Positives = 33/44 (75%)
 Frame = -3

Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561
           AMFR + FL        MDEMEFTEAESNMNDLVSEYQQYQ+ T
Sbjct: 388 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 430


>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
           identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
           thaliana}
          Length = 444

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 30/44 (68%), Positives = 33/44 (75%)
 Frame = -3

Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561
           AMFR + FL        MDEMEFTEAESNMNDLV+EYQQYQ+ T
Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVAEYQQYQDAT 429


>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
           identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
           thaliana}
          Length = 444

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 30/44 (68%), Positives = 33/44 (75%)
 Frame = -3

Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561
           AMFR + FL        MDEMEFTEAESNMNDLV+EYQQYQ+ T
Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVAEYQQYQDAT 429


>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
           identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
           thaliana}
          Length = 449

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 30/44 (68%), Positives = 33/44 (75%)
 Frame = -3

Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561
           AMFR + FL        MDEMEFTEAESNMNDLV+EYQQYQ+ T
Sbjct: 388 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVAEYQQYQDAT 430


>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 769

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -2

Query: 240 FYLHNMCN-RNKMADQNSIPTNADSTRTPVPFYFCCTECIKFGCCHERQTFNC 85
           FYLH  C   ++  D  S       T  P      C+ C K G C  ++TFNC
Sbjct: 571 FYLHVQCAIASEPLDHPSHIHPLYLTSKPDEEQRKCSVCKKSGHCPTKETFNC 623


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,869,807
Number of Sequences: 28952
Number of extensions: 258232
Number of successful extensions: 605
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)