BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0803 (751 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 61 7e-10 At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 61 7e-10 At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 61 7e-10 At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 61 7e-10 At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 61 7e-10 At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 61 7e-10 At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 60 2e-09 At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 60 2e-09 At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 60 2e-09 At3g50010.1 68416.m05468 DC1 domain-containing protein contains ... 28 5.8 >At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly identical to SP|P29512 Tubulin beta-2/beta-3 chain {Arabidopsis thaliana} Length = 450 Score = 61.3 bits (142), Expect = 7e-10 Identities = 31/44 (70%), Positives = 33/44 (75%) Frame = -3 Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561 AMFR + FL MDEMEFTEAESNMNDLVSEYQQYQ+ T Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 >At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly identical to SP|P29512 Tubulin beta-2/beta-3 chain {Arabidopsis thaliana} Length = 450 Score = 61.3 bits (142), Expect = 7e-10 Identities = 31/44 (70%), Positives = 33/44 (75%) Frame = -3 Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561 AMFR + FL MDEMEFTEAESNMNDLVSEYQQYQ+ T Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 >At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis thaliana}; supporting cDNA gi|15451225|gb|AY054693.1| Length = 449 Score = 61.3 bits (142), Expect = 7e-10 Identities = 31/44 (70%), Positives = 33/44 (75%) Frame = -3 Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561 AMFR + FL MDEMEFTEAESNMNDLVSEYQQYQ+ T Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 >At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis thaliana} Length = 449 Score = 61.3 bits (142), Expect = 7e-10 Identities = 31/44 (70%), Positives = 33/44 (75%) Frame = -3 Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561 AMFR + FL MDEMEFTEAESNMNDLVSEYQQYQ+ T Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 >At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis thaliana} Length = 449 Score = 61.3 bits (142), Expect = 7e-10 Identities = 31/44 (70%), Positives = 33/44 (75%) Frame = -3 Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561 AMFR + FL MDEMEFTEAESNMNDLVSEYQQYQ+ T Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 >At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis thaliana} Length = 447 Score = 61.3 bits (142), Expect = 7e-10 Identities = 31/44 (70%), Positives = 33/44 (75%) Frame = -3 Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561 AMFR + FL MDEMEFTEAESNMNDLVSEYQQYQ+ T Sbjct: 388 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVSEYQQYQDAT 430 >At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis thaliana} Length = 444 Score = 60.1 bits (139), Expect = 2e-09 Identities = 30/44 (68%), Positives = 33/44 (75%) Frame = -3 Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561 AMFR + FL MDEMEFTEAESNMNDLV+EYQQYQ+ T Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVAEYQQYQDAT 429 >At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis thaliana} Length = 444 Score = 60.1 bits (139), Expect = 2e-09 Identities = 30/44 (68%), Positives = 33/44 (75%) Frame = -3 Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561 AMFR + FL MDEMEFTEAESNMNDLV+EYQQYQ+ T Sbjct: 387 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVAEYQQYQDAT 429 >At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis thaliana} Length = 449 Score = 60.1 bits (139), Expect = 2e-09 Identities = 30/44 (68%), Positives = 33/44 (75%) Frame = -3 Query: 692 AMFRPQGFLALVPPARAMDEMEFTEAESNMNDLVSEYQQYQEPT 561 AMFR + FL MDEMEFTEAESNMNDLV+EYQQYQ+ T Sbjct: 388 AMFRRKAFLHWYT-GEGMDEMEFTEAESNMNDLVAEYQQYQDAT 430 >At3g50010.1 68416.m05468 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 769 Score = 28.3 bits (60), Expect = 5.8 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Frame = -2 Query: 240 FYLHNMCN-RNKMADQNSIPTNADSTRTPVPFYFCCTECIKFGCCHERQTFNC 85 FYLH C ++ D S T P C+ C K G C ++TFNC Sbjct: 571 FYLHVQCAIASEPLDHPSHIHPLYLTSKPDEEQRKCSVCKKSGHCPTKETFNC 623 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,869,807 Number of Sequences: 28952 Number of extensions: 258232 Number of successful extensions: 605 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 578 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 596 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1663169840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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