Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0802
         (745 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    25   0.48 
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    25   0.48 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    25   0.84 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   6.0  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   6.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   6.0  

>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 620 MLKTTQTLYKLLCNLPSRQRRFPHT*HIF 534
           MLK    +  +L   P++++RFPH  H +
Sbjct: 1   MLKWVLKVGNVLAMTPTKEKRFPHRIHSY 29


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 620 MLKTTQTLYKLLCNLPSRQRRFPHT*HIF 534
           MLK    +  +L   P++++RFPH  H +
Sbjct: 1   MLKWVLKVGNVLAMTPTKEKRFPHRIHSY 29


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 403 GMMYTLYKNHFNKLKGNEH 459
           G + T Y++HFN   GN H
Sbjct: 35  GPLRTSYQHHFNSPAGNAH 53


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 161 DKTRKMSQEKPIFDYHEESQTEKLARKS 244
           +KT+     K ++D   + QTE +  KS
Sbjct: 17  EKTKAQLANKELWDQFHDLQTEMIITKS 44


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
          protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 55 RILDIDCEIC 84
          RILDI C++C
Sbjct: 32 RILDIPCKVC 41


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
          protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 55 RILDIDCEIC 84
          RILDI C++C
Sbjct: 32 RILDIPCKVC 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,367
Number of Sequences: 336
Number of extensions: 2921
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)