Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0802
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)               46   3e-05
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.035
SB_47336| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_40280| Best HMM Match : C2 (HMM E-Value=1.8e-05)                    29   3.0  
SB_45533| Best HMM Match : SAP (HMM E-Value=0.55)                      28   7.0  
SB_23904| Best HMM Match : RdRP (HMM E-Value=0)                        28   7.0  

>SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)
          Length = 103

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 24/59 (40%), Positives = 32/59 (54%)
 Frame = +1

Query: 256 FMVIGITGLXXXXXXXXXXXNXRGAMSTSVFLMQFRVIAQGTVVGALTAGMMYTLYKNH 432
           F+ IGI G              RG MSTS ++M+ RVIAQ  VVG++  GM  T Y+ +
Sbjct: 36  FIPIGILGTTAAIVWGVIAYRHRGPMSTSRYIMRLRVIAQSCVVGSIMVGMGITAYQGN 94


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +1

Query: 322  RGAMSTSVFLMQFRVIAQGTVVGALTAGMMYTLYKNHFNK 441
            RG       +M+ RV+AQG+ + A+  G+ YT+ K+H NK
Sbjct: 3172 RGNQKVQQQMMRARVLAQGSTLIAVIGGLGYTMLKDHANK 3211


>SB_47336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 334 STSVFLMQFRVIAQGTVVGALTAGMMYTLYKN 429
           S S+++M  RV   G ++GA+  G++YT Y++
Sbjct: 190 SNSMYVMSVRVTL-GALIGAVLCGLIYTCYRD 220


>SB_40280| Best HMM Match : C2 (HMM E-Value=1.8e-05)
          Length = 485

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 149 LPRHDKTRKMSQEKPIFDYHEESQTEK 229
           LP H  +    + +PIFDY +ES+ E+
Sbjct: 43  LPEHTDSSGYQENRPIFDYLKESEEER 69


>SB_45533| Best HMM Match : SAP (HMM E-Value=0.55)
          Length = 371

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 128 STEGRLLLPRHDKTRKMSQEKP--IFDYHEESQTEKLARKSKESHL 259
           STEG  +  +  +T K  Q+KP  I +Y+  ++ E L  +  + HL
Sbjct: 280 STEGDTMPSKGSETAKCDQDKPFCIDEYNSATELENLGLECLKQHL 325


>SB_23904| Best HMM Match : RdRP (HMM E-Value=0)
          Length = 1511

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 131  TEGRLLLPRHDKTRKMSQEKPIFDYHEESQTEKLARKSKES 253
            T G  L+P  +  R+  ++KPI    E+ + +KL+ K  +S
Sbjct: 1240 TSGVRLVPHVESNRERKRKKPIRKPEEDKKVKKLSEKPTKS 1280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,302,810
Number of Sequences: 59808
Number of extensions: 372520
Number of successful extensions: 733
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)