BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0802 (745 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25) 46 3e-05 SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035 SB_47336| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0 SB_40280| Best HMM Match : C2 (HMM E-Value=1.8e-05) 29 3.0 SB_45533| Best HMM Match : SAP (HMM E-Value=0.55) 28 7.0 SB_23904| Best HMM Match : RdRP (HMM E-Value=0) 28 7.0 >SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25) Length = 103 Score = 46.0 bits (104), Expect = 3e-05 Identities = 24/59 (40%), Positives = 32/59 (54%) Frame = +1 Query: 256 FMVIGITGLXXXXXXXXXXXNXRGAMSTSVFLMQFRVIAQGTVVGALTAGMMYTLYKNH 432 F+ IGI G RG MSTS ++M+ RVIAQ VVG++ GM T Y+ + Sbjct: 36 FIPIGILGTTAAIVWGVIAYRHRGPMSTSRYIMRLRVIAQSCVVGSIMVGMGITAYQGN 94 >SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3212 Score = 35.9 bits (79), Expect = 0.035 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = +1 Query: 322 RGAMSTSVFLMQFRVIAQGTVVGALTAGMMYTLYKNHFNK 441 RG +M+ RV+AQG+ + A+ G+ YT+ K+H NK Sbjct: 3172 RGNQKVQQQMMRARVLAQGSTLIAVIGGLGYTMLKDHANK 3211 >SB_47336| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 295 Score = 29.5 bits (63), Expect = 3.0 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = +1 Query: 334 STSVFLMQFRVIAQGTVVGALTAGMMYTLYKN 429 S S+++M RV G ++GA+ G++YT Y++ Sbjct: 190 SNSMYVMSVRVTL-GALIGAVLCGLIYTCYRD 220 >SB_40280| Best HMM Match : C2 (HMM E-Value=1.8e-05) Length = 485 Score = 29.5 bits (63), Expect = 3.0 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 149 LPRHDKTRKMSQEKPIFDYHEESQTEK 229 LP H + + +PIFDY +ES+ E+ Sbjct: 43 LPEHTDSSGYQENRPIFDYLKESEEER 69 >SB_45533| Best HMM Match : SAP (HMM E-Value=0.55) Length = 371 Score = 28.3 bits (60), Expect = 7.0 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = +2 Query: 128 STEGRLLLPRHDKTRKMSQEKP--IFDYHEESQTEKLARKSKESHL 259 STEG + + +T K Q+KP I +Y+ ++ E L + + HL Sbjct: 280 STEGDTMPSKGSETAKCDQDKPFCIDEYNSATELENLGLECLKQHL 325 >SB_23904| Best HMM Match : RdRP (HMM E-Value=0) Length = 1511 Score = 28.3 bits (60), Expect = 7.0 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +2 Query: 131 TEGRLLLPRHDKTRKMSQEKPIFDYHEESQTEKLARKSKES 253 T G L+P + R+ ++KPI E+ + +KL+ K +S Sbjct: 1240 TSGVRLVPHVESNRERKRKKPIRKPEEDKKVKKLSEKPTKS 1280 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,302,810 Number of Sequences: 59808 Number of extensions: 372520 Number of successful extensions: 733 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 662 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 732 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2010148439 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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