Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0802
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46370.1 68418.m05707 outward rectifying potassium channel, p...    29   2.5  
At2g39360.1 68415.m04831 protein kinase family protein contains ...    28   7.5  
At1g29180.1 68414.m03570 DC1 domain-containing protein contains ...    27   9.9  

>At5g46370.1 68418.m05707 outward rectifying potassium channel,
           putative (KCO2) identical to KCO2 protein [Arabidopsis
           thaliana] gi|6686780|emb|CAB64717; similar to kco1
           [Arabidopsis thaliana] gi|2230761|emb|CAA69158; member
           of the 2 pore, 4 transmembrane (2P/4TM) K+ channel
           family, PMID:11500563
          Length = 443

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 95  PIGVSFSTVCFSTEGRLLLPRHDKTRKMSQEKPIFDYHEESQTEKLARKSKESH 256
           P   S +T  FS    LLLP  +  + + + KP  ++H       +A  +  SH
Sbjct: 77  PSTSSSATTSFSDSTDLLLPLTEPNKPVRKSKPTINFHRSKTAPAMAAINNISH 130


>At2g39360.1 68415.m04831 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 815

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 452 FPLSLLKWFL*RVYIMPAVSA 390
           FP+    WFL R+Y +P VSA
Sbjct: 90  FPIEEHGWFLIRIYFLPLVSA 110


>At1g29180.1 68414.m03570 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 444

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 3   ESRERDTSTSQQCIADITNIGYRL*NLLSC--CRSVFHSVPCA 125
           E+++RD   S+QC A IT I +   NL SC  C  + H   CA
Sbjct: 167 ENKDRDYDDSKQCDACITPIYFG--NLYSCIQCSFILHE-ECA 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,287,053
Number of Sequences: 28952
Number of extensions: 239563
Number of successful extensions: 502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)