BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0802 (745 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g46370.1 68418.m05707 outward rectifying potassium channel, p... 29 2.5 At2g39360.1 68415.m04831 protein kinase family protein contains ... 28 7.5 At1g29180.1 68414.m03570 DC1 domain-containing protein contains ... 27 9.9 >At5g46370.1 68418.m05707 outward rectifying potassium channel, putative (KCO2) identical to KCO2 protein [Arabidopsis thaliana] gi|6686780|emb|CAB64717; similar to kco1 [Arabidopsis thaliana] gi|2230761|emb|CAA69158; member of the 2 pore, 4 transmembrane (2P/4TM) K+ channel family, PMID:11500563 Length = 443 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/54 (27%), Positives = 24/54 (44%) Frame = +2 Query: 95 PIGVSFSTVCFSTEGRLLLPRHDKTRKMSQEKPIFDYHEESQTEKLARKSKESH 256 P S +T FS LLLP + + + + KP ++H +A + SH Sbjct: 77 PSTSSSATTSFSDSTDLLLPLTEPNKPVRKSKPTINFHRSKTAPAMAAINNISH 130 >At2g39360.1 68415.m04831 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 815 Score = 27.9 bits (59), Expect = 7.5 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -3 Query: 452 FPLSLLKWFL*RVYIMPAVSA 390 FP+ WFL R+Y +P VSA Sbjct: 90 FPIEEHGWFLIRIYFLPLVSA 110 >At1g29180.1 68414.m03570 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 444 Score = 27.5 bits (58), Expect = 9.9 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +3 Query: 3 ESRERDTSTSQQCIADITNIGYRL*NLLSC--CRSVFHSVPCA 125 E+++RD S+QC A IT I + NL SC C + H CA Sbjct: 167 ENKDRDYDDSKQCDACITPIYFG--NLYSCIQCSFILHE-ECA 206 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,287,053 Number of Sequences: 28952 Number of extensions: 239563 Number of successful extensions: 502 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 495 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 502 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1643603136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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