Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0801
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    52   3e-08
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   4.5  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   5.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 52.4 bits (120), Expect = 3e-08
 Identities = 26/58 (44%), Positives = 31/58 (53%)
 Frame = +2

Query: 251 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 424
           PR+NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL L
Sbjct: 102 PRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQL 159



 Score = 48.0 bits (109), Expect = 7e-07
 Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +3

Query: 72  FXIRAELGXPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPXI 245
           F IR EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAP +
Sbjct: 40  FIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDV 99

Query: 246 AFPE*II*DFDSYPPPL 296
           A+P      F   PP L
Sbjct: 100 AYPRVNNFTFWLLPPAL 116


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 277 TPTPLPYIINFKKNCRKWCRNRMNS 351
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = -1

Query: 456 LIAPIIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINN 298
           LI+P    IP   ++K+A + D+P C+ + ES   ++   P P +T + ++++
Sbjct: 30  LISPPPSPIP---NDKVASTVDVPKCSTIPESPKDSI-VEPKPTATPVAQLHS 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,254,562
Number of Sequences: 5004
Number of extensions: 19407
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)