BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0799 (797 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 28 1.8 SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 26 5.4 SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 5.4 SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 26 5.4 SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe... 26 7.2 SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 9.5 SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 9.5 >SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces pombe|chr 1|||Manual Length = 969 Score = 27.9 bits (59), Expect = 1.8 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = -2 Query: 202 SGYTN-PRGCLRCHNVRRRVGTPPNY*SNKRCALCCPTELMRRNSPGQPTSQISLAFST- 29 SGY + R C RCH+ R+++ N+ + R C + +R S S F Sbjct: 92 SGYDSYHRECFRCHDCRKQI-IDSNFKRDNRTIFCNDCKQVRHPSRSSDESADYHNFEVD 150 Query: 28 VTVRP 14 VT++P Sbjct: 151 VTIKP 155 >SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces pombe|chr 3|||Manual Length = 564 Score = 26.2 bits (55), Expect = 5.4 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = +3 Query: 351 WAEGGSKYSHMVAQKSTRMSFIRS-VVDFLKKYDFDGLDLD 470 W + G + + + S S++ + KYDFDGL +D Sbjct: 189 WQDSGVLLADLDVESSDVSSYLSDHFKSLISKYDFDGLRID 229 >SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharomyces pombe|chr 3|||Manual Length = 461 Score = 26.2 bits (55), Expect = 5.4 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +3 Query: 312 KHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMS 410 +HP KF+V VGG+ ++ H K T S Sbjct: 136 QHPPFKFVVFVGGFRAEKPEFDHFYNPKLTTPS 168 >SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosaccharomyces pombe|chr 3|||Manual Length = 478 Score = 26.2 bits (55), Expect = 5.4 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 Query: 390 QKSTRMSFIRSVVDFLKKYDFDGLDLD 470 + R F V D +K+Y FDG+ LD Sbjct: 190 KNEVRKFFQNWVSDLIKRYQFDGIRLD 216 >SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 203 Score = 25.8 bits (54), Expect = 7.2 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +1 Query: 277 RVVSVTSHPSAPNTPMSSSWSRLAAGLKAAP 369 + V SHPSAPN P + AGL AAP Sbjct: 165 KFVPTHSHPSAPNKPPFET----VAGLFAAP 191 >SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccharomyces pombe|chr 1|||Manual Length = 569 Score = 25.4 bits (53), Expect = 9.5 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 6/88 (6%) Frame = -2 Query: 736 LYKGECTSAKPAPITAQIIRHHVDSVQFLTQLWYMI-SLHQPEISK----RYGSSQ-LPS 575 LYK ++ PAPIT H + QF T + S+H P + +Y SS PS Sbjct: 184 LYKQPSFNSNPAPITTSSATH---TSQFSTSSSSSVNSVHTPVMVPNPYFQYNSSMTAPS 240 Query: 574 STGSDERPL*LLDEIQELVFIGKEPPRS 491 S+ S P + Q V +PP++ Sbjct: 241 SSSSSVAP--FVPRRQFSVSSASDPPQT 266 >SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces pombe|chr 1|||Manual Length = 949 Score = 25.4 bits (53), Expect = 9.5 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -1 Query: 464 IQTVEVIFLQEVDNASD 414 + TVE+ LQE++NASD Sbjct: 223 LDTVELHLLQEIENASD 239 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,368,812 Number of Sequences: 5004 Number of extensions: 71842 Number of successful extensions: 224 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 217 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 224 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 389395636 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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