Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0799
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    28   1.8  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   5.4  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    26   5.4  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   5.4  
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe...    26   7.2  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   9.5  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   9.5  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -2

Query: 202 SGYTN-PRGCLRCHNVRRRVGTPPNY*SNKRCALCCPTELMRRNSPGQPTSQISLAFST- 29
           SGY +  R C RCH+ R+++    N+  + R   C   + +R  S     S     F   
Sbjct: 92  SGYDSYHRECFRCHDCRKQI-IDSNFKRDNRTIFCNDCKQVRHPSRSSDESADYHNFEVD 150

Query: 28  VTVRP 14
           VT++P
Sbjct: 151 VTIKP 155


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 351 WAEGGSKYSHMVAQKSTRMSFIRS-VVDFLKKYDFDGLDLD 470
           W + G   + +  + S   S++       + KYDFDGL +D
Sbjct: 189 WQDSGVLLADLDVESSDVSSYLSDHFKSLISKYDFDGLRID 229


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 312 KHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMS 410
           +HP  KF+V VGG+     ++ H    K T  S
Sbjct: 136 QHPPFKFVVFVGGFRAEKPEFDHFYNPKLTTPS 168


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 390 QKSTRMSFIRSVVDFLKKYDFDGLDLD 470
           +   R  F   V D +K+Y FDG+ LD
Sbjct: 190 KNEVRKFFQNWVSDLIKRYQFDGIRLD 216


>SPAC869.06c |||cation binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 277 RVVSVTSHPSAPNTPMSSSWSRLAAGLKAAP 369
           + V   SHPSAPN P   +     AGL AAP
Sbjct: 165 KFVPTHSHPSAPNKPPFET----VAGLFAAP 191


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
 Frame = -2

Query: 736 LYKGECTSAKPAPITAQIIRHHVDSVQFLTQLWYMI-SLHQPEISK----RYGSSQ-LPS 575
           LYK    ++ PAPIT     H   + QF T     + S+H P +      +Y SS   PS
Sbjct: 184 LYKQPSFNSNPAPITTSSATH---TSQFSTSSSSSVNSVHTPVMVPNPYFQYNSSMTAPS 240

Query: 574 STGSDERPL*LLDEIQELVFIGKEPPRS 491
           S+ S   P   +   Q  V    +PP++
Sbjct: 241 SSSSSVAP--FVPRRQFSVSSASDPPQT 266


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 464 IQTVEVIFLQEVDNASD 414
           + TVE+  LQE++NASD
Sbjct: 223 LDTVELHLLQEIENASD 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,812
Number of Sequences: 5004
Number of extensions: 71842
Number of successful extensions: 224
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)