Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0798
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    30   0.42 
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    29   0.73 
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    28   1.7  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    27   2.2  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    27   3.0  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   5.2  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    26   6.8  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    26   6.8  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   9.0  

>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 227 KFLVPHVDPSYWSINTRMDLKGRKRATKSKRKRNMAKAKALQYPWTLRSRHTK 385
           + LV H D  +  +  R    G K + K K+K+N+   K L  P      H K
Sbjct: 281 RILVEHQDTEFHLLKQRQSSMGGKVSAKKKQKQNLNITKGLPLPNNGACEHYK 333


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +1

Query: 286 EGEKKSHEVEAKAQYGK-GKSATISLDT-AFSPHENYLQFKG--QAPQAENLKKLEFTIN 453
           E EKK  +       G+  + ++ S +T A +    Y+ F G  + P  +NLKKL+ +I 
Sbjct: 632 EREKKRRQTHRSVSSGEVSRESSESRNTNAKASKRVYITFTGYDKKPSIDNLKKLDMSIT 691

Query: 454 SKNPS 468
           S NPS
Sbjct: 692 S-NPS 695


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 288 FKSILVFILQYDGST*GTKNLMVPVPSLRLFLPFTSILYKSALICTD 148
           F  IL+ +L Y G T   K L +  PSL  F P   I  +  ++C D
Sbjct: 21  FFDILIILLGYIG-TWNLKTLQLVNPSLWSFSPSLWIYIRGTVLCAD 66


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 119 KDFAEYTLVESVQINADLYKIDVNGKKSLKDGTGTIKFLVPHVDPSYWSINT 274
           K+    T +E+ Q+   + +++    + LKDG+ T +  +PH +PS  S+ T
Sbjct: 112 KELHSSTTLENDQLRQKVRQLEEE-LRILKDGSFTFEMSLPHRNPSLSSLPT 162


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 310 VEAKAQYGKGKSATISLDTAFSPHENYLQFKGQAPQAENLKKL 438
           V   A  G+GKSA + L  A +    Y      +P  ENLK L
Sbjct: 278 VSLTAGRGRGKSAALGLAIAAAIAHGYSNIFITSPSPENLKTL 320


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 6/29 (20%), Positives = 19/29 (65%)
 Frame = +2

Query: 38  ILTVRLPFEKAHDIKWVSTIFFLQPEGKD 124
           ++ V +PF  + D++W + + +++ + K+
Sbjct: 730 VMVVGMPFPNSQDVEWQAKVSYVEEKAKE 758


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 522 LENNVVLSKAHPVLDLKYSSPSSNRPRXIFIKGTSLSSTQGKIEVN 659
           L  N + SK   +  +KYS+PS++    I       +S+Q  +  N
Sbjct: 315 LNENPIWSKRFSISSIKYSAPSTSNASNIAPDSAPPASSQFSVPFN 360


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = +3

Query: 510 RVYKLENNVVLSKAH--PVLDLKYSSPS--SNRPR 602
           +VY + NN +LS+AH    L L++++P   SN+ R
Sbjct: 231 KVYNVSNNTLLSEAHYKLALALEFTNPEDPSNKSR 265


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 308 KSKRKRNMAKAKALQYPWTLRSRHTKTISSSKGKLPKPR 424
           K  +     + K + Y   L +R+ K++S++KG    PR
Sbjct: 237 KDPKLNPATQTKTVVYEINLNTRNLKSLSTAKGACSSPR 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,344,504
Number of Sequences: 5004
Number of extensions: 72307
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)