Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0798
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0526 - 6901003-6901056,6901070-6901404,6901423-6901607,690... 31 1.3
02_02_0335 + 9063749-9064216,9064846-9064890,9065351-9065470,906... 30 1.8
06_03_1246 + 28667511-28667750,28667846-28668037,28669145-286693... 30 2.3
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 28 7.1
12_01_0456 + 3587244-3587440,3587595-3587766,3587877-3587999,358... 28 9.4
10_08_0497 - 18336819-18337140,18337226-18337360,18337579-183376... 28 9.4
07_01_0203 + 1469575-1470045 28 9.4
07_01_0199 - 1420982-1421452 28 9.4
07_01_0195 - 1387831-1388301 28 9.4
07_01_0191 - 1354678-1355148 28 9.4
07_01_0187 - 1321525-1321995 28 9.4
>04_01_0526 -
6901003-6901056,6901070-6901404,6901423-6901607,
6902201-6904641
Length = 1004
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = +3
Query: 363 HCVLATRKLSPVQRASSPSREPEETGVHYKLQESVSG 473
+C +AT+K P+ +ASS S+ P +T + +L+++ +G
Sbjct: 488 YCRIATKKNIPLSQASSKSQLPLKTFTYKELEKATAG 524
>02_02_0335 +
9063749-9064216,9064846-9064890,9065351-9065470,
9066025-9067527
Length = 711
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 278 MDLKGRKRATKSKRKRNMAKAKALQYPWTLRSRHTKTISSSKG 406
+D+KGR R K + K L W+L +HT +S+ G
Sbjct: 225 LDIKGRFRGADYNLKTSTELLKVLNRIWSLEEQHTADMSAING 267
>06_03_1246 +
28667511-28667750,28667846-28668037,28669145-28669310,
28669785-28670200
Length = 337
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 394 QFKGQAPQAENLKKLEFTINSKNPSPDSYSSTLIVDADEGSTN 522
QFKG APQ L F + P SYS T + D S N
Sbjct: 218 QFKGAAPQYSPPMNLAFLRQMRQTCPLSYSPTTVAMLDAVSPN 260
>04_04_1690 -
35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 28.3 bits (60), Expect = 7.1
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = +2
Query: 68 AHDIKWVSTIFFLQPEGKDFA--EYTLVESVQINADLYKIDVNGKKSLKDGTGTIKFLVP 241
AH +W+ LQPE D + + +E+ N Y + KS + G + L P
Sbjct: 279 AHGERWIDDAASLQPERADSSLDLFDAMEAGATNDRTYSASICDTKS-RVGE-RLSALRP 336
Query: 242 HVDPSYWSINTRMDLKGRKRATKSKRKRNMAKA 340
D + NTR DL RK + R R +KA
Sbjct: 337 GRDEE-MNENTRDDLLKRKLSRTGSRLRGKSKA 368
>12_01_0456 +
3587244-3587440,3587595-3587766,3587877-3587999,
3588165-3588338,3588537-3588647,3588737-3588870,
3588945-3589038,3589122-3589220,3590494-3590630,
3590709-3590803,3590922-3591045,3591122-3591209,
3592867-3593043,3593130-3593167,3593398-3593485,
3594101-3594209,3594374-3594443,3594520-3594667,
3595069-3595197,3595292-3595417,3595596-3595658,
3595952-3596197
Length = 913
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 322 AQYGKGKSATISLDTAFSPHENYLQFKGQAPQAENLKKL-EFTINSKN 462
A G+GKSA + L A + Y AP ENLK L +F N
Sbjct: 283 AARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFDFVCKGMN 330
>10_08_0497 -
18336819-18337140,18337226-18337360,18337579-18337673,
18337759-18337845,18337923-18338129,18338209-18338535,
18338711-18338803,18338861-18339175,18339283-18339792,
18339889-18339960,18341209-18341256,18341427-18341551,
18341640-18341661
Length = 785
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 304 HEVEAKAQYGKGKSATISLDTAFSPHENYLQFKGQAPQAENLKKLEFTINSKNPS-PDSY 480
H+++A A++ K A I +++LQ + +A ++ L K T++ ++ DS
Sbjct: 572 HQIKASAEFVSSKRAGIGFSPNDPAVDSFLQVEKEA-KSSPLSKYVATLHQRSQDRMDSL 630
Query: 481 SSTLIVDADEGST 519
T ++ E ST
Sbjct: 631 DDTSVIVGAESST 643
>07_01_0203 + 1469575-1470045
Length = 156
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = -3
Query: 611 ENLSW--SVRAWTGVFEVQYWM 552
ENLSW SV+AWT V W+
Sbjct: 71 ENLSWNPSVQAWTAASSVDQWV 92
>07_01_0199 - 1420982-1421452
Length = 156
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = -3
Query: 611 ENLSW--SVRAWTGVFEVQYWM 552
ENLSW SV+AWT V W+
Sbjct: 71 ENLSWNPSVQAWTAASSVDQWV 92
>07_01_0195 - 1387831-1388301
Length = 156
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = -3
Query: 611 ENLSW--SVRAWTGVFEVQYWM 552
ENLSW SV+AWT V W+
Sbjct: 71 ENLSWNPSVQAWTAASSVDQWV 92
>07_01_0191 - 1354678-1355148
Length = 156
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = -3
Query: 611 ENLSW--SVRAWTGVFEVQYWM 552
ENLSW SV+AWT V W+
Sbjct: 71 ENLSWNPSVQAWTAASSVDQWV 92
>07_01_0187 - 1321525-1321995
Length = 156
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = -3
Query: 611 ENLSW--SVRAWTGVFEVQYWM 552
ENLSW SV+AWT V W+
Sbjct: 71 ENLSWNPSVQAWTAASSVDQWV 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,343,178
Number of Sequences: 37544
Number of extensions: 454497
Number of successful extensions: 1105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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