Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0798
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)               32   0.59 
SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_47752| Best HMM Match : RVT_1 (HMM E-Value=0.047)                   31   1.4  
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)                     31   1.4  
SB_20440| Best HMM Match : SRP-alpha_N (HMM E-Value=1.4)               30   1.8  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  29   3.1  
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)                     29   4.1  
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_15987| Best HMM Match : RVT_1 (HMM E-Value=3.7e-27)                 28   9.5  

>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
          Length = 523

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
 Frame = +2

Query: 206 KDGTGTIKFLVPHVDPSYWSINTRMDLKGRKRATKSKRKRNMAKAKALQYPWTLRSRHTK 385
           KD  G  +  VP+V      +N     KGRKR  K+ +  N  KA    Y   L + H +
Sbjct: 136 KDVVGRARGFVPYVGMVTILMNDYPKFKGRKR-KKAHKDVNAPKAPLTGYVRFL-NEHRE 193

Query: 386 TISSSKGKLPKPRT*R----NWSSL*TPRIRLRTHTVARSS*MLMKGLQIGEQCST 541
            + S    LP     R     WS L TP+ +L      +     MK L+  ++  T
Sbjct: 194 KVRSENPDLPFHEVTRILGNMWSQLPTPQKQLFLEEAEKDKERYMKELEEYQRTDT 249


>SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = -3

Query: 518 VDPSSASTMSVLLYESGDGFLEFIVNSSFFRFSAWGACPLNWR*FSCGENA---VSKDIV 348
           +DP +A     L Y + +G +E++   +  R   +GAC ++WR    G +A   V K  +
Sbjct: 212 IDPDAAHRQKCLYYNT-EGVVEWVKKKTGCREVVFGACAVSWRGVFSGLSADFLVKKLRL 270

Query: 347 ALLPLPYCAFASTS 306
               +P CA  + +
Sbjct: 271 PKGVIPVCALKAVT 284


>SB_47752| Best HMM Match : RVT_1 (HMM E-Value=0.047)
          Length = 727

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 518 VDPSSASTMSVLLYESGDGFLEFIVNSSFFRFSAWGACPLNWR 390
           +DP +A     L Y + +G +E++   +  R   +GAC ++WR
Sbjct: 640 IDPDAAHRQKCLYYNT-EGVVEWVKRKTGCREVVFGACAVSWR 681


>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 518 VDPSSASTMSVLLYESGDGFLEFIVNSSFFRFSAWGACPLNWR 390
           +DP +A     L Y + +G +E++   +  R   +GAC ++WR
Sbjct: 53  IDPDAAHRQKCLYYNT-EGVVEWVKRKTGCREVVFGACAVSWR 94


>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
          Length = 167

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 518 VDPSSASTMSVLLYESGDGFLEFIVNSSFFRFSAWGACPLNWR 390
           +DP +A     L Y + +G +E++   +  R   +GAC ++WR
Sbjct: 80  IDPDAAHRQKCLYYNT-EGVVEWVKRKTGCREVVFGACAVSWR 121


>SB_20440| Best HMM Match : SRP-alpha_N (HMM E-Value=1.4)
          Length = 526

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +1

Query: 373 SPHENYLQFKGQAPQAENLKKLEFTINSKNPSPDSYSSTLIVDADEGST 519
           +PHENY  F+    QA N KK+        P  D  S    V  +E  T
Sbjct: 28  NPHENYQDFEETLRQAINSKKISTLSTILEPLNDILSGQSTVPENEAKT 76


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
 Frame = +2

Query: 35   FILTVRLPFEKAH--DIKWVSTIFFLQPEGKDFAEYTLVESVQINADLYKIDVNGKKSLK 208
            F +T+ +  EK H  D+K    +F L+  G+  ++  L   V+ +A+LYK ++   +  +
Sbjct: 2820 FYVTMGVFTEKDHNGDLKVTDAVFGLEMHGQLISKVDLHLGVEASANLYKSEIPVIRHRQ 2879

Query: 209  DGTGTIKFLVPHV-DPS--YWSINTRMDLK 289
             G G I   +P V  PS  ++ +  R ++K
Sbjct: 2880 IG-GDIYICIPGVCIPSAFFFDVEAREEVK 2908


>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
          Length = 1058

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 308 KSKRKRNMAKAKALQYPWTLRSRHTKTISSSKGK 409
           K+KR RN  + KA +YP T R +  +  ++ +GK
Sbjct: 513 KAKRYRNTKRGKAKRYPNTKRGKAKRYPNTKRGK 546



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 260 WSINTRMDLKGRKRATK---SKRKRNMAKAKALQYPWTLRSRHTKTISSSKGK 409
           W  NT+     R   TK   +KR  N  + KA +YP T R R  +  ++ +GK
Sbjct: 560 WYPNTKRGKAKRYPNTKRGKAKRYPNTKRGKAKRYPNTKRGRAKRYPNTKRGK 612


>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/85 (25%), Positives = 35/85 (41%)
 Frame = +2

Query: 170  LYKIDVNGKKSLKDGTGTIKFLVPHVDPSYWSINTRMDLKGRKRATKSKRKRNMAKAKAL 349
            L+  ++NG++  K G+ TI     H D    S     D + R+R + S+R R+  + K  
Sbjct: 799  LHSNNINGREGRKRGSSTILTRERHSDRDR-SPRRERDRERRERDSSSRRHRDKDRDKGS 857

Query: 350  QYPWTLRSRHTKTISSSKGKLPKPR 424
                  R   +     SK    K R
Sbjct: 858  DRDRDKREERSSRRERSKDTREKKR 882


>SB_15987| Best HMM Match : RVT_1 (HMM E-Value=3.7e-27)
          Length = 745

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +3

Query: 516 YKLENNVVLSKAHPVLDLKYSSPSSNRPRXIFIKGTSLSS 635
           Y L N +     HPVL     S  SNRP+ + I G+SLSS
Sbjct: 252 YSLLNELRFLNVHPVLIRWLCSFLSNRPQYVRI-GSSLSS 290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,374,557
Number of Sequences: 59808
Number of extensions: 522616
Number of successful extensions: 1331
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)