BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0798 (769 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 32 0.59 SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0 SB_47752| Best HMM Match : RVT_1 (HMM E-Value=0.047) 31 1.4 SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4 SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5) 31 1.4 SB_20440| Best HMM Match : SRP-alpha_N (HMM E-Value=1.4) 30 1.8 SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 29 3.1 SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9) 29 4.1 SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5 SB_15987| Best HMM Match : RVT_1 (HMM E-Value=3.7e-27) 28 9.5 >SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) Length = 523 Score = 31.9 bits (69), Expect = 0.59 Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 4/116 (3%) Frame = +2 Query: 206 KDGTGTIKFLVPHVDPSYWSINTRMDLKGRKRATKSKRKRNMAKAKALQYPWTLRSRHTK 385 KD G + VP+V +N KGRKR K+ + N KA Y L + H + Sbjct: 136 KDVVGRARGFVPYVGMVTILMNDYPKFKGRKR-KKAHKDVNAPKAPLTGYVRFL-NEHRE 193 Query: 386 TISSSKGKLPKPRT*R----NWSSL*TPRIRLRTHTVARSS*MLMKGLQIGEQCST 541 + S LP R WS L TP+ +L + MK L+ ++ T Sbjct: 194 KVRSENPDLPFHEVTRILGNMWSQLPTPQKQLFLEEAEKDKERYMKELEEYQRTDT 249 >SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 299 Score = 31.1 bits (67), Expect = 1.0 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Frame = -3 Query: 518 VDPSSASTMSVLLYESGDGFLEFIVNSSFFRFSAWGACPLNWR*FSCGENA---VSKDIV 348 +DP +A L Y + +G +E++ + R +GAC ++WR G +A V K + Sbjct: 212 IDPDAAHRQKCLYYNT-EGVVEWVKKKTGCREVVFGACAVSWRGVFSGLSADFLVKKLRL 270 Query: 347 ALLPLPYCAFASTS 306 +P CA + + Sbjct: 271 PKGVIPVCALKAVT 284 >SB_47752| Best HMM Match : RVT_1 (HMM E-Value=0.047) Length = 727 Score = 30.7 bits (66), Expect = 1.4 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = -3 Query: 518 VDPSSASTMSVLLYESGDGFLEFIVNSSFFRFSAWGACPLNWR 390 +DP +A L Y + +G +E++ + R +GAC ++WR Sbjct: 640 IDPDAAHRQKCLYYNT-EGVVEWVKRKTGCREVVFGACAVSWR 681 >SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 95 Score = 30.7 bits (66), Expect = 1.4 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = -3 Query: 518 VDPSSASTMSVLLYESGDGFLEFIVNSSFFRFSAWGACPLNWR 390 +DP +A L Y + +G +E++ + R +GAC ++WR Sbjct: 53 IDPDAAHRQKCLYYNT-EGVVEWVKRKTGCREVVFGACAVSWR 94 >SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5) Length = 167 Score = 30.7 bits (66), Expect = 1.4 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = -3 Query: 518 VDPSSASTMSVLLYESGDGFLEFIVNSSFFRFSAWGACPLNWR 390 +DP +A L Y + +G +E++ + R +GAC ++WR Sbjct: 80 IDPDAAHRQKCLYYNT-EGVVEWVKRKTGCREVVFGACAVSWR 121 >SB_20440| Best HMM Match : SRP-alpha_N (HMM E-Value=1.4) Length = 526 Score = 30.3 bits (65), Expect = 1.8 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = +1 Query: 373 SPHENYLQFKGQAPQAENLKKLEFTINSKNPSPDSYSSTLIVDADEGST 519 +PHENY F+ QA N KK+ P D S V +E T Sbjct: 28 NPHENYQDFEETLRQAINSKKISTLSTILEPLNDILSGQSTVPENEAKT 76 >SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) Length = 3369 Score = 29.5 bits (63), Expect = 3.1 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 5/90 (5%) Frame = +2 Query: 35 FILTVRLPFEKAH--DIKWVSTIFFLQPEGKDFAEYTLVESVQINADLYKIDVNGKKSLK 208 F +T+ + EK H D+K +F L+ G+ ++ L V+ +A+LYK ++ + + Sbjct: 2820 FYVTMGVFTEKDHNGDLKVTDAVFGLEMHGQLISKVDLHLGVEASANLYKSEIPVIRHRQ 2879 Query: 209 DGTGTIKFLVPHV-DPS--YWSINTRMDLK 289 G G I +P V PS ++ + R ++K Sbjct: 2880 IG-GDIYICIPGVCIPSAFFFDVEAREEVK 2908 >SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9) Length = 1058 Score = 29.1 bits (62), Expect = 4.1 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +2 Query: 308 KSKRKRNMAKAKALQYPWTLRSRHTKTISSSKGK 409 K+KR RN + KA +YP T R + + ++ +GK Sbjct: 513 KAKRYRNTKRGKAKRYPNTKRGKAKRYPNTKRGK 546 Score = 27.9 bits (59), Expect = 9.5 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Frame = +2 Query: 260 WSINTRMDLKGRKRATK---SKRKRNMAKAKALQYPWTLRSRHTKTISSSKGK 409 W NT+ R TK +KR N + KA +YP T R R + ++ +GK Sbjct: 560 WYPNTKRGKAKRYPNTKRGKAKRYPNTKRGKAKRYPNTKRGRAKRYPNTKRGK 612 >SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 931 Score = 27.9 bits (59), Expect = 9.5 Identities = 22/85 (25%), Positives = 35/85 (41%) Frame = +2 Query: 170 LYKIDVNGKKSLKDGTGTIKFLVPHVDPSYWSINTRMDLKGRKRATKSKRKRNMAKAKAL 349 L+ ++NG++ K G+ TI H D S D + R+R + S+R R+ + K Sbjct: 799 LHSNNINGREGRKRGSSTILTRERHSDRDR-SPRRERDRERRERDSSSRRHRDKDRDKGS 857 Query: 350 QYPWTLRSRHTKTISSSKGKLPKPR 424 R + SK K R Sbjct: 858 DRDRDKREERSSRRERSKDTREKKR 882 >SB_15987| Best HMM Match : RVT_1 (HMM E-Value=3.7e-27) Length = 745 Score = 27.9 bits (59), Expect = 9.5 Identities = 18/40 (45%), Positives = 22/40 (55%) Frame = +3 Query: 516 YKLENNVVLSKAHPVLDLKYSSPSSNRPRXIFIKGTSLSS 635 Y L N + HPVL S SNRP+ + I G+SLSS Sbjct: 252 YSLLNELRFLNVHPVLIRWLCSFLSNRPQYVRI-GSSLSS 290 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,374,557 Number of Sequences: 59808 Number of extensions: 522616 Number of successful extensions: 1331 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1234 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1331 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2083999566 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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