Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0798
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical pr...    31   0.90 
AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like tran...    31   0.90 
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    29   3.6  
U88308-2|AAM15557.1|  313|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    29   3.6  
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    29   3.6  
AC006830-1|AAK68610.3|  802|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical ...    29   4.8  
Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z70753-3|CAA94768.1|  343|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U29535-3|AAK31458.1|  556|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type tran...    28   8.4  

>Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical
           protein F33H1.1b protein.
          Length = 805

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 2/128 (1%)
 Frame = +2

Query: 281 DLKGRKRATKSKRKRNMAKAKALQ-YPWTLRS-RHTKTISSSKGKLPKPRT*RNWSSL*T 454
           D++ +K   KS++     K + L+ +P   R  R     S S  K          SS  T
Sbjct: 45  DVENQKSPEKSEKSEKTIKEEPLETHPSGERKLRSASKDSKSLSKETHNTISTRSSSSGT 104

Query: 455 PRIRLRTHTVARSS*MLMKGLQIGEQCSTI*GPSSIGPQILQSKLEQTKXDFHQGHLS*F 634
           PR ++    V  +  ML K L +  QCS +    ++G   +   L+ TK   H   ++  
Sbjct: 105 PRKKMEPEDVKPNIKMLKKSLPVSFQCSNL-NDGTVGDASVM--LDPTKISLHSSSVA-- 159

Query: 635 YSRQNRSE 658
           Y  +++ E
Sbjct: 160 YGEESQDE 167


>AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like
           transcription factor DAF-19 protein.
          Length = 805

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 2/128 (1%)
 Frame = +2

Query: 281 DLKGRKRATKSKRKRNMAKAKALQ-YPWTLRS-RHTKTISSSKGKLPKPRT*RNWSSL*T 454
           D++ +K   KS++     K + L+ +P   R  R     S S  K          SS  T
Sbjct: 45  DVENQKSPEKSEKSEKTIKEEPLETHPSGERKLRSASKDSKSLSKETHNTISTRSSSSGT 104

Query: 455 PRIRLRTHTVARSS*MLMKGLQIGEQCSTI*GPSSIGPQILQSKLEQTKXDFHQGHLS*F 634
           PR ++    V  +  ML K L +  QCS +    ++G   +   L+ TK   H   ++  
Sbjct: 105 PRKKMEPEDVKPNIKMLKKSLPVSFQCSNL-NDGTVGDASVM--LDPTKISLHSSSVA-- 159

Query: 635 YSRQNRSE 658
           Y  +++ E
Sbjct: 160 YGEESQDE 167


>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
           presynaptic activity protein.
          Length = 1409

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 406 QAPQAENLKKLEFTINSKNPSPDSYSSTLIVDAD 507
           + PQ+E++  ++ +++S   SPDS  ST  VD++
Sbjct: 600 ELPQSESVVSIDSSLSSGRSSPDSSLSTSAVDSE 633


>U88308-2|AAM15557.1|  313|Caenorhabditis elegans Hypothetical
           protein C32E8.6b protein.
          Length = 313

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 322 AQYGKGKSATISLDTAFSPHENYLQFKGQAPQAENLKKLEFTIN 453
           + Y      TI +  A SP EN+ +   + P+ ENL + +F+ N
Sbjct: 259 SSYDLSALKTIYVGAAASPPENFAKVAERLPELENLIQCKFSYN 302


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
           defective protein3, isoform b protein.
          Length = 1408

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 406 QAPQAENLKKLEFTINSKNPSPDSYSSTLIVDAD 507
           + PQ+E++  ++ +++S   SPDS  ST  VD++
Sbjct: 600 ELPQSESVVSIDSSLSSGRSSPDSSLSTSAVDSE 633


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
           defective protein3, isoform a protein.
          Length = 1409

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 406 QAPQAENLKKLEFTINSKNPSPDSYSSTLIVDAD 507
           + PQ+E++  ++ +++S   SPDS  ST  VD++
Sbjct: 600 ELPQSESVVSIDSSLSSGRSSPDSSLSTSAVDSE 633


>AC006830-1|AAK68610.3|  802|Caenorhabditis elegans Hypothetical
           protein ZK105.3 protein.
          Length = 802

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 659 VHFDFALSRTKRGALDENLSWSVRAWTGVFEVQYWMGLR*Y-YIVLQFVDPSSAS 498
           +  DF L  TK+  LDEN+  + R      ++ YW     Y  +  QF  P   S
Sbjct: 427 MQLDFELKETKKTDLDENVQRATRKINYFGDIVYWCNETDYSNLTNQFPSPEQLS 481


>AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical
           protein F14D2.7 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 135 YSAKSLPSGWRKNIVETHL 79
           Y ++ +PSGW K ++E H+
Sbjct: 44  YRSRQVPSGWAKTVLENHI 62


>Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical
           protein F46C5.7 protein.
          Length = 199

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -2

Query: 447 SELQFLQVLGLGSLPFELEIVFVWRERSVQGYCSAF-AFAILRFRFDFVALFLPFKSILV 271
           +E +F+  L    +PF     FV++          F AFA L F   FV  FL   +  V
Sbjct: 10  NERRFVDYLNSSFMPFWRRTAFVYKCELAFSILILFCAFAELIFYDCFVIFFLMIIASFV 69

Query: 270 FILQY 256
           F+L Y
Sbjct: 70  FVLLY 74


>AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical
           protein F55A12.8 protein.
          Length = 1043

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 292 EKKSHEV-EAKAQYGKGKSATISLDTAFSPHENYLQFKGQAPQAENLKKL-EFTI 450
           EK+S+      A  G+GKSA + L  A +    Y      +P  ENLK L EF +
Sbjct: 271 EKQSNVTCSLTAGRGRGKSAAVGLSLAGAIAFGYTNIFVTSPSPENLKTLFEFVV 325


>Z70753-3|CAA94768.1|  343|Caenorhabditis elegans Hypothetical
           protein F40F9.4 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 17  KKFNDNFILTVRLPFEKAHDIKWVSTIFFLQPEGKDFAEYT 139
           KKF  ++ L + L F   + I W +T+ F     +D  EYT
Sbjct: 117 KKFTSDWKLGIILIFPVVYAIWWAATVRFCFWPNEDLREYT 157


>Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical
           protein F33H1.1a protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
 Frame = +2

Query: 281 DLKGRKRATKSKRKRNMAKAKALQ-YPWTLRS-RHTKTISSSKGKLPKPRT*RNWSSL*T 454
           D++ +K   KS++     K + L+ +P   R  R     S S  K          SS  T
Sbjct: 45  DVENQKSPEKSEKSEKTIKEEPLETHPSGERKLRSASKDSKSLSKETHNTISTRSSSSGT 104

Query: 455 PRIRLRTHTVARSS*MLMKGLQIGEQCSTI 544
           PR ++    V  +  ML K L +  QCS +
Sbjct: 105 PRKKMEPEDVKPNIKMLKKSLPVSFQCSNL 134


>U29535-3|AAK31458.1|  556|Caenorhabditis elegans Hypothetical
           protein C25H3.6a protein.
          Length = 556

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 262 EYKYKNGLEGEKKSHEVEAKAQYGKGKSATISLDTAFSPHENYLQFKGQAP 414
           E + K  L+ E+ +H +++ A YG   SAT + +     +E  +Q KG AP
Sbjct: 276 EERVKRELKDEELAHSLQSSASYGNFGSAT-TTERKKRKYERKIQ-KGTAP 324


>AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type
           transcription factor DAF-19 short variant protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
 Frame = +2

Query: 281 DLKGRKRATKSKRKRNMAKAKALQ-YPWTLRS-RHTKTISSSKGKLPKPRT*RNWSSL*T 454
           D++ +K   KS++     K + L+ +P   R  R     S S  K          SS  T
Sbjct: 45  DVENQKSPEKSEKSEKTIKEEPLETHPSGERKLRSASKDSKSLSKETHNTISTRSSSSGT 104

Query: 455 PRIRLRTHTVARSS*MLMKGLQIGEQCSTI 544
           PR ++    V  +  ML K L +  QCS +
Sbjct: 105 PRKKMEPEDVKPNIKMLKKSLPVSFQCSNL 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,210,505
Number of Sequences: 27780
Number of extensions: 395702
Number of successful extensions: 943
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)