Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0798
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   3.1  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   3.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.5  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   7.2  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   9.5  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -2

Query: 441 LQFLQVLGLGSLPFELEIVFVWRERSVQGYCSAFAFAILRFRFDFVALFLPFKSILVFIL 262
           L ++ +   G +   +  + +WR  S+Q   + + F +      F+ L LPF+ + VF  
Sbjct: 38  LTYVVIFVTGFVGNIITCIVIWRNPSMQTPTNYYLFNLAVSDLLFLILGLPFE-LSVFWQ 96

Query: 261 QY 256
           QY
Sbjct: 97  QY 98


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 336 RQKRYNILGHCVLATRKLSPVQRASSPSREPEETGVHYKLQ 458
           R++RYNI     L   KL+     +SP+  P  T    K +
Sbjct: 102 RRQRYNIAAANPLLAEKLAAPSSQASPTSIPYATRAEIKTE 142


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
 Frame = -3

Query: 584 WTGVFEVQYWMGLR*YYIVLQFVDPSSASTMSVLLYESGDGFLE--FIVNSSFFRFSAWG 411
           WT V E+  WM L      L +  PS    ++ +  +S D ++    + NS    F   G
Sbjct: 85  WTSVMELHSWMTLMWTDSHLSW-KPSDFDGINYIYVKSDDIWVPDISVYNSGDMTFDQTG 143

Query: 410 ACPLNWR*FSCGENAVSKDIVALLPLPYCAFASTSW 303
             P     FS G  +VS  + ++  +  CA   +SW
Sbjct: 144 IPPTTCLVFSSG--SVS-CVPSVKHVAKCATDFSSW 176


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = +2

Query: 227 KFLVPHVDPSYWSINTRMDLKGRKRATKSKRKRNMAKAKALQYPWTLRSRHTKTISSSKG 406
           K L        +S +   + K  K   K ++ R  +K ++       RSR  K ISS   
Sbjct: 28  KLLEERTSRKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLSN 87

Query: 407 K 409
           K
Sbjct: 88  K 88


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = +2

Query: 227 KFLVPHVDPSYWSINTRMDLKGRKRATKSKRKRNMAKAKALQYPWTLRSRHTKTISSSKG 406
           K L        +S +   + K  K   K ++ R  +K ++       RSR  K ISS   
Sbjct: 28  KLLEERTSRKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLSN 87

Query: 407 K 409
           K
Sbjct: 88  K 88


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 15/61 (24%), Positives = 23/61 (37%)
 Frame = +2

Query: 227 KFLVPHVDPSYWSINTRMDLKGRKRATKSKRKRNMAKAKALQYPWTLRSRHTKTISSSKG 406
           K L        +S +   + K  K     ++ R  +K ++       RSR  K ISS   
Sbjct: 261 KLLEERTSRKRYSCSREREQKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLSN 320

Query: 407 K 409
           K
Sbjct: 321 K 321


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 57  GNLTVNMKLSLNFFSPF 7
           GNL +N K +L FF PF
Sbjct: 874 GNLMINNKYALKFF-PF 889


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 733 NGQCCPSGCXLQKRHQGKCR 674
           N   C   C  Q+R  G CR
Sbjct: 77  NHSACAIRCLAQRRKGGSCR 96


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 15/61 (24%), Positives = 23/61 (37%)
 Frame = +2

Query: 227 KFLVPHVDPSYWSINTRMDLKGRKRATKSKRKRNMAKAKALQYPWTLRSRHTKTISSSKG 406
           K L        +S +   + K  K     ++ R  +K ++       RSR  K ISS   
Sbjct: 28  KLLEERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLSN 87

Query: 407 K 409
           K
Sbjct: 88  K 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,921
Number of Sequences: 438
Number of extensions: 5206
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)