BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0798 (769 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g28070.1 68415.m03408 ABC transporter family protein 33 0.16 At1g11520.1 68414.m01323 pliceosome associated protein-related c... 29 4.5 At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containi... 28 7.9 At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa... 28 7.9 At2g43280.1 68415.m05380 far-red impaired responsive family prot... 28 7.9 At1g69660.1 68414.m08017 meprin and TRAF homology domain-contain... 28 7.9 >At2g28070.1 68415.m03408 ABC transporter family protein Length = 730 Score = 33.5 bits (73), Expect = 0.16 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Frame = -2 Query: 474 VRRRILGVYSELQFLQVLGLGSLPFELEIVFVWRERSVQGYCSAFAFAILRFRFDFVALF 295 V R+ V+ + F +LG+ +P L+ + ++R + + AF F + +F LF Sbjct: 489 VATRVAAVFVFVSFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQFLGSIPFLF 548 Query: 294 L-PFKSILVF 268 L S LVF Sbjct: 549 LMSISSSLVF 558 >At1g11520.1 68414.m01323 pliceosome associated protein-related contains similarity to spliceosome associated protein SAP 145 GI:1173904 from [Homo sapiens] Length = 196 Score = 28.7 bits (61), Expect = 4.5 Identities = 20/71 (28%), Positives = 31/71 (43%) Frame = +2 Query: 170 LYKIDVNGKKSLKDGTGTIKFLVPHVDPSYWSINTRMDLKGRKRATKSKRKRNMAKAKAL 349 L +I+V S + T +V HVD + +D + R+R K K K + A A+ Sbjct: 28 LLQINVRSLFSQQHPNMTAHSIVAHVDSVLPKKSREIDRRRRRRKRKKKNKASQADVDAM 87 Query: 350 QYPWTLRSRHT 382 +L S T Sbjct: 88 DVSKSLSSTPT 98 >At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containing protein vacontains Pfam profile PF01535: PPR repeat Length = 621 Score = 27.9 bits (59), Expect = 7.9 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -1 Query: 136 VLSKIFAFRLEEEYRRNPFNIVSFFEW 56 VLS F R+ +E R +P ++FF W Sbjct: 223 VLSDNFVIRVLKELREHPLKALAFFHW 249 >At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 492 Score = 27.9 bits (59), Expect = 7.9 Identities = 20/70 (28%), Positives = 29/70 (41%) Frame = -2 Query: 336 FAILRFRFDFVALFLPFKSILVFILQYDGST*GTKNLMVPVPSLRLFLPFTSILYKSALI 157 FAI FR DF + FLP L+ I + PS+ F + + L+ Sbjct: 90 FAITIFRQDFSSGFLPLVVTLLLIKALHWLAQKRVEYIETTPSVSKLSHFRIVSFMGFLL 149 Query: 156 CTDSTSVYSA 127 DS +YS+ Sbjct: 150 LVDSLFMYSS 159 >At2g43280.1 68415.m05380 far-red impaired responsive family protein / FAR1 family protein weak similarity to far-red impaired response protein [Arabidopsis thaliana] GI:5764395; contains Pfam profile PF03101: FAR1 family Length = 206 Score = 27.9 bits (59), Expect = 7.9 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = +3 Query: 306 RSRSESAIWQRQKRYNILGHCVLATRKLSPVQRASSPSREPEETGVHYKLQES 464 RS + I R+ N GHCV K V++ +RE + +H K S Sbjct: 56 RSEKDGRILARRFGCNKEGHCVSIRGKFGSVRKPRPSTREGCKAMIHVKYDRS 108 >At1g69660.1 68414.m08017 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain Length = 231 Score = 27.9 bits (59), Expect = 7.9 Identities = 8/18 (44%), Positives = 13/18 (72%) Frame = +1 Query: 172 IQNRCEWQEKS*GWNWNH 225 +Q+ C ++E S GW W+H Sbjct: 178 VQSSCWYKESSRGWGWDH 195 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,425,024 Number of Sequences: 28952 Number of extensions: 378196 Number of successful extensions: 989 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 958 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 989 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1721869952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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