Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0798
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28070.1 68415.m03408 ABC transporter family protein                33   0.16 
At1g11520.1 68414.m01323 pliceosome associated protein-related c...    29   4.5  
At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containi...    28   7.9  
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa...    28   7.9  
At2g43280.1 68415.m05380 far-red impaired responsive family prot...    28   7.9  
At1g69660.1 68414.m08017 meprin and TRAF homology domain-contain...    28   7.9  

>At2g28070.1 68415.m03408 ABC transporter family protein
          Length = 730

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -2

Query: 474 VRRRILGVYSELQFLQVLGLGSLPFELEIVFVWRERSVQGYCSAFAFAILRFRFDFVALF 295
           V  R+  V+  + F  +LG+  +P  L+ + ++R  +   +  AF F + +F      LF
Sbjct: 489 VATRVAAVFVFVSFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQFLGSIPFLF 548

Query: 294 L-PFKSILVF 268
           L    S LVF
Sbjct: 549 LMSISSSLVF 558


>At1g11520.1 68414.m01323 pliceosome associated protein-related
           contains similarity to spliceosome associated protein
           SAP 145 GI:1173904 from [Homo sapiens]
          Length = 196

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +2

Query: 170 LYKIDVNGKKSLKDGTGTIKFLVPHVDPSYWSINTRMDLKGRKRATKSKRKRNMAKAKAL 349
           L +I+V    S +    T   +V HVD      +  +D + R+R  K K K + A   A+
Sbjct: 28  LLQINVRSLFSQQHPNMTAHSIVAHVDSVLPKKSREIDRRRRRRKRKKKNKASQADVDAM 87

Query: 350 QYPWTLRSRHT 382
               +L S  T
Sbjct: 88  DVSKSLSSTPT 98


>At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containing
           protein vacontains Pfam profile PF01535: PPR repeat
          Length = 621

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 136 VLSKIFAFRLEEEYRRNPFNIVSFFEW 56
           VLS  F  R+ +E R +P   ++FF W
Sbjct: 223 VLSDNFVIRVLKELREHPLKALAFFHW 249


>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 492

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = -2

Query: 336 FAILRFRFDFVALFLPFKSILVFILQYDGST*GTKNLMVPVPSLRLFLPFTSILYKSALI 157
           FAI  FR DF + FLP    L+ I             +   PS+     F  + +   L+
Sbjct: 90  FAITIFRQDFSSGFLPLVVTLLLIKALHWLAQKRVEYIETTPSVSKLSHFRIVSFMGFLL 149

Query: 156 CTDSTSVYSA 127
             DS  +YS+
Sbjct: 150 LVDSLFMYSS 159


>At2g43280.1 68415.m05380 far-red impaired responsive family protein
           / FAR1 family protein weak similarity to far-red
           impaired response protein [Arabidopsis thaliana]
           GI:5764395; contains Pfam profile PF03101: FAR1 family
          Length = 206

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 306 RSRSESAIWQRQKRYNILGHCVLATRKLSPVQRASSPSREPEETGVHYKLQES 464
           RS  +  I  R+   N  GHCV    K   V++    +RE  +  +H K   S
Sbjct: 56  RSEKDGRILARRFGCNKEGHCVSIRGKFGSVRKPRPSTREGCKAMIHVKYDRS 108


>At1g69660.1 68414.m08017 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 231

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 172 IQNRCEWQEKS*GWNWNH 225
           +Q+ C ++E S GW W+H
Sbjct: 178 VQSSCWYKESSRGWGWDH 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,425,024
Number of Sequences: 28952
Number of extensions: 378196
Number of successful extensions: 989
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)