BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0797 (775 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 27 3.9 SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 26 6.9 SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 9.1 SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 9.1 SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 25 9.1 >SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 669 Score = 26.6 bits (56), Expect = 3.9 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = -2 Query: 570 HKGFTDDMAVNEEVGIDLVRR 508 H + D VN+E+ DL+RR Sbjct: 631 HPSYKQDSVVNDEINYDLIRR 651 >SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase Gpt1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1448 Score = 25.8 bits (54), Expect = 6.9 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +3 Query: 96 VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 230 + TK + + D K+K +++ L P+ I IAK+YN E Sbjct: 1174 IMTKSVIEHTDKKVK----FWFIENFLSPSFKSSIPAIAKKYNFE 1214 >SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces pombe|chr 1|||Manual Length = 635 Score = 25.4 bits (53), Expect = 9.1 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Frame = -2 Query: 669 PLRPVNHYQIVVSNRDAVVFPED--RVLGGFSHLHHKGFTDDMAVNEEVG 526 P+ + IV+S + FP +VLGG SH+ D+ AV E G Sbjct: 231 PVHNASELDIVLSEL-RIHFPTTPIQVLGGHSHIRDYAIYDEKAVGIESG 279 >SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr 1|||Manual Length = 1854 Score = 25.4 bits (53), Expect = 9.1 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = -1 Query: 529 RDRSRKEGQVETLAVGSVEARGSKSVDEHASVDPFSHPARSP 404 R S E V T+A G E + SV++H V + P RSP Sbjct: 1753 RSFSIVESTVPTIASG--EGDDNHSVEDHLKVPTDNEPRRSP 1792 >SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Schizosaccharomyces pombe|chr 2|||Manual Length = 134 Score = 25.4 bits (53), Expect = 9.1 Identities = 9/36 (25%), Positives = 22/36 (61%) Frame = +3 Query: 117 VNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYN 224 VNL K ++ ++++H+L+ ++I+ K+Y+ Sbjct: 12 VNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYD 47 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,997,073 Number of Sequences: 5004 Number of extensions: 59184 Number of successful extensions: 163 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 158 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 163 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 373338084 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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