Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0796
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 29 0.99
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 27 2.3
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 27 2.3
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 3.0
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 5.3
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 7.0
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 7.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.2
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 25 9.2
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 28.7 bits (61), Expect = 0.99
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 75 MNCPFLSRLSITCSMSFSLISSTFA 1
+N PF +L ITC S+ + STFA
Sbjct: 126 VNWPFRKKLKITCVYSYVALCSTFA 150
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 235 RIKIFLSDQPPWQYIIIPCAATEPKYYILVRVHHLLLSG 351
R +F + PP +I+I +++ Y L ++H+ +SG
Sbjct: 540 RAPLFKHEVPPTDFILIRNSSSYGSKYYLKNINHMFVSG 578
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/83 (22%), Positives = 32/83 (38%)
Frame = +1
Query: 253 SDQPPWQYIIIPCAATEPKYYILVRVHHLLLSGAKSINIGDLLLVEQLKQTDRMAQEYTQ 432
S + PW+ + +P + K + V + L A N L+ + M +
Sbjct: 17 SRESPWERLRVPYRNKKQKKWASVHNNEAQLHSANKRNDNCLIQRSSTWRLGDMITLVIK 76
Query: 433 QSPLTKLFPTPSAIPQLWEKLHE 501
P+T L + LWE LH+
Sbjct: 77 DIPVTWLSNEGGKLYNLWEPLHD 99
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 5 NVDEIKEKLIEHVIDKRDRNGQFMFPRLRHLLVS 106
N +E+++ +++ + D RDR + PR+ HL V+
Sbjct: 595 NYEEVRDSILKKLSDLRDRPKRSEKPRIYHLDVA 628
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 207 VIYRNTSVTSYQNISLRPTALAIHNNTVCSYRTKILYFSSRAPSATIRREVY 362
+ YRN SY N S+R ++ NN V + ++K ++ SS RE +
Sbjct: 218 ITYRNGQALSYYNGSVRQASM---NNNVNNNKSKDIWSSSNTEEREQIREFW 266
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 510 NTWNEFVSEYDPVESPRALKSMPGAF 587
N N+F +D +E+ R L S+P F
Sbjct: 615 NVANQFTVSFDELENIRVLNSLPSLF 640
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 7.0
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = -3
Query: 652 FDFLLSSLKALTLDINNRPATWNAP-GMLFKARGLSTGSYSETNSF------HVFTYF-H 497
F F L L + LD+ R TW+A + G +T S++ +F +F YF +
Sbjct: 571 FRFELGLLDFIDLDLTERLGTWSASLSTILLVLGKTTPSFTTLGAFTGNLGYPIFKYFQN 630
Query: 496 EVFPIIEV*QKALEIISLKGFVVY 425
+ V L I + G+V+Y
Sbjct: 631 NSLQHLLVPVLGLASICVFGYVIY 654
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 429 TTKPFNEIISNAFCYTSIMGKTS*KYVNTWNEFVSEYDPVESPRALKSMPGAFHVAGLLL 608
++ P + IIS+ TS++ +S ++ ++F S + S + S+P F +L
Sbjct: 523 SSTPSSSIISSPM--TSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSIL 580
Query: 609 ISSVSA 626
SS S+
Sbjct: 581 SSSTSS 586
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 680 RFTGNYSTWQQSEEXVRG 733
R TG YSTW ++ + V+G
Sbjct: 15 RNTGIYSTWDEASDQVKG 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,876
Number of Sequences: 5004
Number of extensions: 71652
Number of successful extensions: 210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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