Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0796
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     31   0.78 
06_01_0786 - 5881178-5881303,5881523-5881627,5882078-5882169,588...    28   7.2  
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486...    28   9.6  

>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 271  QYIIIPCAATEPKYYILVRVHHLLLSGAKSINIGD 375
            +Y++I C +T+PKY     +HH  L    SI + D
Sbjct: 5111 KYLLILCYSTKPKYQPKASIHHKGLKEDSSIEVDD 5145


>06_01_0786 -
           5881178-5881303,5881523-5881627,5882078-5882169,
           5882267-5882336,5882639-5882724,5882916-5883017,
           5883375-5883597,5883693-5883758,5883896-5883986,
           5884019-5884057,5885401-5885548,5885623-5885715,
           5885782-5885886,5886645-5886826,5886912-5887084
          Length = 566

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 589 WNAPGMLFKARGLSTGSYSETNSFHVFTY 503
           W+ P M +    L  G +SE   FHVF Y
Sbjct: 213 WSNPNMSWDKAQLWVGYFSEKGFFHVFPY 241


>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
            29048829-29049210,29049370-29049513,29049593-29049777,
            29049925-29050051,29050603-29050676,29051071-29051147,
            29051256-29051292,29051453-29051619,29051800-29051983,
            29052053-29052130,29052451-29052570,29052648-29052707,
            29053057-29053179,29053848-29053941,29054019-29054197,
            29054737-29055039,29055373-29055474,29055553-29055693,
            29055831-29055995,29056168-29056344,29056432-29056554,
            29057787-29057867,29057983-29058099,29058214-29058386,
            29058846-29058923,29058994-29059141,29059755-29059877,
            29060015-29060071,29060145-29060255,29060382-29060573,
            29060690-29060863,29061263-29061373,29061462-29061531,
            29061734-29061812,29061898-29062000,29062086-29062256,
            29062348-29062470,29062548-29062661,29062935-29063041,
            29063117-29063168,29063245-29063351,29063589-29063703,
            29063819-29063929,29064016-29064153,29064230-29064352,
            29064535-29064606,29064774-29064886,29066780-29067110,
            29067199-29067381,29068669-29068863,29068943-29069110,
            29069208-29069340,29069511-29069595,29069726-29069765
          Length = 2591

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -3

Query: 709  LPSRVVACESDHQWLCXCPFDFLLSS--LKALTLDINNRPATWNAPGMLFKARGLST 545
            L +  V C  D+  L    F F + S  L  LT ++NNR     A   L K   LST
Sbjct: 2254 LQTTFVKCLQDNNRLVLLSFRFAVCSIVLPPLTQNLNNRSVRTRAASALGKLSALST 2310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,027,094
Number of Sequences: 37544
Number of extensions: 422766
Number of successful extensions: 923
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)