Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0796
(780 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48669| Best HMM Match : DUF1298 (HMM E-Value=0.0015) 37 0.016
SB_59651| Best HMM Match : UPF0089 (HMM E-Value=5.8e-06) 36 0.028
SB_8000| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_23661| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08) 29 5.6
SB_22790| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_40048| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08) 29 5.6
SB_24622| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-17) 28 7.4
SB_50792| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_30985| Best HMM Match : DUF1450 (HMM E-Value=1.5) 28 7.4
SB_56757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_48669| Best HMM Match : DUF1298 (HMM E-Value=0.0015)
Length = 529
Score = 37.1 bits (82), Expect = 0.016
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +2
Query: 5 NVDEIKEKLIEHVIDKRDRNGQFMFPRLRHLLVSCWGNYAWDVNVRFRFENHFIVANAVY 184
NV E+K + E ++ + + + + PR+ + G Y W + +F + HF V+
Sbjct: 128 NVAELKSIVCERLVFRVNDQNERICPRMTQAIKRYHGVYVWQEDCQFSIDKHF----CVW 183
Query: 185 RGR-PVTESNIQEYISDIVSKYFSQTNRP 268
G+ T+ ++E IS+I S P
Sbjct: 184 DGKLAKTKQELEEVISEIASMSLPDNQSP 212
Score = 29.1 bits (62), Expect = 4.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 256 DQPPWQYIIIPCAATEPKYYILVRVHH 336
+Q PWQ+ ++P P + L+R H
Sbjct: 209 NQSPWQFYVVPTKFESPSFVFLLRAIH 235
>SB_59651| Best HMM Match : UPF0089 (HMM E-Value=5.8e-06)
Length = 425
Score = 36.3 bits (80), Expect = 0.028
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 VDEIKEKLIEHVIDKRDRNGQFMFPRLRHLLVSCWGNYAWDVNVRFRFENHFIVANAVYR 187
+ E +E + ++D R+ G+ FPR R ++ + Y + + F E+H Y+
Sbjct: 80 MSEFREVVRTRLVDSRNSKGELSFPRARKMVRPGYFQYFFQDDPDFDIEDHVF----KYQ 135
Query: 188 G-RPVTESNIQEYISDIVSKYFSQTNRP 268
G P ++ ++ +S++ SK F + P
Sbjct: 136 GDPPKSKQELEAIVSEMYSKPFPEGKSP 163
>SB_8000| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -3
Query: 670 WLCXCPFDFLLSSLKALTLDINNRPATWNAPGMLFKARGLSTGSYSETNSFHV 512
++C C F LL SL ++ P T P M+ K+ G+ ++T +F++
Sbjct: 372 FICLCRFSLLLPSLFCTGPEMIPGPETIPGPKMIPKSTPTDPGTRNDTGNFYL 424
>SB_23661| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08)
Length = 490
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 256 DQPPWQYIIIPCAATEPKYYILVRVHHLLLSG 351
D PW + ++ ++ K+ I +R+HH L G
Sbjct: 167 DISPWMFQVMSYNTSKEKFAICIRIHHALGDG 198
>SB_22790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 74 MFPRLRHLLVSCWG-NYAW-DVNVRFRFENHFIV 169
MFP RH CWG N W ++NV F+ FI+
Sbjct: 326 MFPPYRHEPRPCWGPNSGWPELNVTFKLAIIFIL 359
>SB_40048| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08)
Length = 535
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 256 DQPPWQYIIIPCAATEPKYYILVRVHHLLLSG 351
D PW + ++ ++ K+ I +R+HH L G
Sbjct: 167 DISPWMFQVMSYNTSKEKFAICIRIHHALGDG 198
>SB_24622| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-17)
Length = 897
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -1
Query: 714 DCCQVE*LPVNRTISGSVSAHSISC*VLSKHSRWISITDRRRGTHPACFSKHEGFRRGRI 535
+C L + IS + + I+C +KH RW+ + + H + K +GF +
Sbjct: 661 NCAVGSKLSQTKRISLTSTCTGINCAFTTKH-RWVMFKETQNRRHETIWQKVKGFSPRML 719
Query: 534 QKQ 526
KQ
Sbjct: 720 NKQ 722
>SB_50792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 709 LPSRVVACESD--HQWLCXCPFDFLLSSLKALTLD 611
+PS +VACESD L C FD L S L A D
Sbjct: 73 IPSSLVACESDGIPSSLVACEFDGLPSPLVACEFD 107
>SB_30985| Best HMM Match : DUF1450 (HMM E-Value=1.5)
Length = 599
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +2
Query: 11 DEIKEKLIEHVIDKRDRNGQFMFPRLRHLLVSCWGNYAWDVNVRFRFENHFIVA 172
+EI++ + E+ + + F FP+LR V +AW F+ N + +
Sbjct: 149 EEIRDFIDENWLYYCNTKKNFRFPKLREFAVKICSGFAWKPIANFQTRNFILTS 202
>SB_56757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 557 SCFEKHAGCVPRRRSVIDIQRECFERTQQEIEW 655
SC +K G + + + EC ER Q + EW
Sbjct: 114 SCMQKAKGDADKNTTCLQAHNECKERQQGDEEW 146
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,884,818
Number of Sequences: 59808
Number of extensions: 513850
Number of successful extensions: 1213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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