Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0796
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82260-5|CAB05133.1|  194|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna bindi...    29   4.9  
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi...    29   4.9  

>Z82260-5|CAB05133.1|  194|Caenorhabditis elegans Hypothetical
           protein C32H11.6 protein.
          Length = 194

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 629 ERTQQEIEWAXTEPLMVRFTGNYSTWQQSEE 721
           ER Q+  EWA    +  ++   YSTWQ  EE
Sbjct: 59  ERDQKSAEWAEKHGIADKWAVFYSTWQAREE 89


>U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform a protein.
          Length = 868

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 191 RPVTESNIQEYISDIVSKYFSQTN 262
           RPVT+  ++EY+   +  YFS+ N
Sbjct: 316 RPVTDDTLKEYVRKQIEYYFSEEN 339


>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform b protein.
          Length = 1065

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 191 RPVTESNIQEYISDIVSKYFSQTN 262
           RPVT+  ++EY+   +  YFS+ N
Sbjct: 513 RPVTDDTLKEYVRKQIEYYFSEEN 536


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,704,629
Number of Sequences: 27780
Number of extensions: 391041
Number of successful extensions: 971
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)