Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0796
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    27   0.15 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.2  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   5.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.7  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 23  EKLIEHVIDKRDRNGQFMFPRLRHLLVSCWGN 118
           E+  + V +  DRNG   F  L  L + CW +
Sbjct: 304 ERSSQSVAEVMDRNGVLFFGLLSDLAIGCWNS 335


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 14  EIKEKLIE-HVIDKRDRNGQFMFPRLRHLLVSCWG 115
           + K+ LI  H   +  RNG   +   RHL++SC G
Sbjct: 154 DFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQG 188


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 14  EIKEKLIE-HVIDKRDRNGQFMFPRLRHLLVSCWG 115
           + K+ LI  H   +  RNG   +   RHL++SC G
Sbjct: 154 DFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQG 188


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 14  EIKEKLIE-HVIDKRDRNGQFMFPRLRHLLVSCWG 115
           + K+ LI  H   +  RNG   +   RHL++SC G
Sbjct: 205 DFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQG 239


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 14  EIKEKLIE-HVIDKRDRNGQFMFPRLRHLLVSCWG 115
           + K+ LI  H   +  RNG   +   RHL++SC G
Sbjct: 154 DFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQG 188


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 155 NHFIVANAVYRGRPVTESNIQEYISDIVSK 244
           N F+     Y G P   S + E +SD+  +
Sbjct: 415 NRFLGGIGGYNGLPTVMSGLDESLSDVTPR 444


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 352 AKSINIGDLLLVEQLKQTDRMAQEYTQQSPLTKLFPTPSAIP 477
           A+S+  G  +  EQLK+TD +   Y  +   +   P  S  P
Sbjct: 707 ARSLMEGPRMTAEQLKRTD-IIHNYIMRGEASPRSPNASPSP 747


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 648 ISC*VLSKHSRWISI 604
           ++C VLS  S+W+SI
Sbjct: 62  VTCDVLSWQSKWLSI 76


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 629 ERTQQEIEWAXTEPLMV 679
           +RT  +I+W   +P MV
Sbjct: 29  QRTMSKIQWRKPKPAMV 45



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 597  GLLLISSVSALRELNKKSNGQXQSH*WSDSQATTLLGSSQ 716
            GL L ++ S   +LN++     Q+     SQA T  G S+
Sbjct: 1137 GLKLATTASHANQLNRQGKQVIQTQYQVVSQAQTSSGQSK 1176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,107
Number of Sequences: 438
Number of extensions: 5298
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)