Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0796
         (780 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10500.1 68416.m01260 no apical meristem (NAM) family protein...    31   0.86 
At3g23750.1 68416.m02986 leucine-rich repeat family protein / pr...    30   2.0  
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot...    29   2.6  
At3g58980.1 68416.m06574 F-box family protein contains two F-box...    29   4.6  
At4g10410.1 68417.m01709 hypothetical protein                          28   6.0  
At2g43795.1 68415.m05444 hypothetical protein                          28   6.0  

>At3g10500.1 68416.m01260 no apical meristem (NAM) family protein
           similar to  to NAC2 (GI:645671) [Arabidopsis thaliana];
           contains Pfam PF02365: No apical meristem (NAM) protein
          Length = 549

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 690 PVNRTISGSVSAHSISC*VLSKHSRWISITDRRRGTHPACFS 565
           P+ R   GS+    I C V  KHS  +  +D   GT  +C++
Sbjct: 272 PIIRDRDGSLQNEGIGCGVQDKHSETLQSSDNIFGTDTSCYN 313


>At3g23750.1 68416.m02986 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 928

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 640 LSSLKALTLDINNRPATWNAPGMLFKARGLSTGSYSETN 524
           L+SL+ L+L  NN   TW+ P  L  +  L+T     TN
Sbjct: 131 LTSLQILSLSDNNNITTWSFPSELVDSTSLTTIYLDNTN 169


>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487; contains
           prenyl group binding site (CAAX box) Prosite:PS00294
          Length = 769

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 643 LLSSLKALTLDINNRPATWNAPGMLFKARGLSTGS 539
           LLS  + L  + NN  + WN P  LF+ RG S  S
Sbjct: 527 LLSLCETLFPNDNNHNSVWNGPHSLFRRRGGSNRS 561


>At3g58980.1 68416.m06574 F-box family protein contains two F-box
           domains Pfam:PF00646
          Length = 594

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -3

Query: 607 NNRPATWNAPGMLFKARGLSTGSYSETNSFHVFTYFHEVFPIIE 476
           +N   + N   ++   R +   +    N+F  F+YFHE  P+ +
Sbjct: 273 DNDTISSNPTNLINGLRNVEIMNLQSPNTFQAFSYFHEAIPVFK 316


>At4g10410.1 68417.m01709 hypothetical protein
          Length = 263

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 71  FMFPRLRHLLVSCWGNYAWDVNVR 142
           F+F  L HL +  W +Y W+V V+
Sbjct: 217 FIFNHLEHLTLPVWDDYPWNVLVQ 240


>At2g43795.1 68415.m05444 hypothetical protein
          Length = 170

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/70 (25%), Positives = 36/70 (51%)
 Frame = +2

Query: 11  DEIKEKLIEHVIDKRDRNGQFMFPRLRHLLVSCWGNYAWDVNVRFRFENHFIVANAVYRG 190
           +E+K++ +E   DK  R  +      R + +S   NY+ D++ + R E+  I +  + RG
Sbjct: 36  EELKKQEVEADTDKLMREYRAQLDAERAMKLSKGRNYSSDISRKGRRESSQIESAEIPRG 95

Query: 191 RPVTESNIQE 220
           R     +I++
Sbjct: 96  RKAKRESIRK 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,505,569
Number of Sequences: 28952
Number of extensions: 354385
Number of successful extensions: 871
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)