Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0795
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450...    31   0.94 
06_03_0139 + 17130980-17131594,17131740-17132009                       31   0.94 
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355     31   1.2  
12_01_0850 + 7985289-7985789,7986636-7986888,7987173-7987231           29   2.9  
05_03_0397 + 13488642-13488941,13489711-13489963,13490594-134906...    29   2.9  
02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569           29   3.8  
03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009     28   6.6  
02_05_0380 + 28472494-28473090                                         28   8.8  

>09_02_0121 +
           4502628-4502696,4503727-4503829,4504205-4504328,
           4505963-4506306,4506383-4506487,4507907-4508288,
           4509173-4509437,4509936-4510094,4511150-4511201,
           4511266-4511462,4512865-4513350,4513797-4514093
          Length = 860

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +1

Query: 316 NNEVTAEGFSYDFETSNGXXAXAXGVATNGVQSQGSFAYKGDDGQDYSITYTADENGYQP 495
           NN + A G S + +  +G       V   G QS+GS  +    G+D S    ++  G   
Sbjct: 731 NNTMVASGTSVESDDISGSQFKETNVYIAGQQSEGSGVWIPAPGRDISGLQPSNYYGLPL 790

Query: 496 QGAHL 510
           QG HL
Sbjct: 791 QGQHL 795


>06_03_0139 + 17130980-17131594,17131740-17132009
          Length = 294

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -3

Query: 535 PRGSGEEXGDARPGAG-IRSRRQCK*YYSPD--HHHPCRRSCLGTG 407
           P  +G    DA  GAG + S  QC+ YY  D  HHHPC    +  G
Sbjct: 23  PEAAGTAPFDA--GAGYVPSYGQCQYYYYYDDHHHHPCSTELIHAG 66


>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
          Length = 1109

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = -3

Query: 598 YHHQRYQRPHHGRXAPKISRFPR--GSGEEXGDARPGAGIRSRRQCK*YYSPDHHHPCRR 425
           +HHQR QR       P++ R P     GE+  +  P   I S  + K    P  H P  R
Sbjct: 151 HHHQRQQRRGSRTRDPRVRRGPLRIPYGEDEKEEPPATPIASSNKNKREEPPTKHRPMAR 210

Query: 424 SCLGTG 407
              G G
Sbjct: 211 PPGGGG 216


>12_01_0850 + 7985289-7985789,7986636-7986888,7987173-7987231
          Length = 270

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 265 SSRSQASADAGAQILRLNNEVTAEGFSYDFETSN 366
           ++   A   AG ++LR+ NE TA   +Y FE  N
Sbjct: 201 TATKDAGRIAGLEVLRIINEPTAASLAYGFEKKN 234


>05_03_0397 +
           13488642-13488941,13489711-13489963,13490594-13490673,
           13491251-13491393,13491512-13491610,13491785-13491974,
           13492504-13492902,13492993-13493400
          Length = 623

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 265 SSRSQASADAGAQILRLNNEVTAEGFSYDFETSN 366
           ++   A   AG ++LR+ NE TA   +Y FE  N
Sbjct: 134 TATKDAGRIAGLEVLRIINEPTAASLAYGFEKKN 167


>02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569
          Length = 272

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +3

Query: 93  QTALTTNTCRPEAMLEPVLALVSAWLREAVAXEATEVWDREASLHNRAEAT 245
           +TA      R  A + P LA    WL  A A  AT  W R  S    AE++
Sbjct: 221 RTAEAEGWRRSGAAVLPDLAAAREWLTAAAAPPATAAWRRSPSSQLTAESS 271


>03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009
          Length = 768

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 428 AKLPWDWTPLVATPCAXAXXPLEVSKS*EKPSAVTSLFS 312
           A LP + TP+ ATP   A  P  + +    P A+  LF+
Sbjct: 613 ALLPQEMTPMPATPPPSALEPGSLPERASSPCAIAGLFT 651


>02_05_0380 + 28472494-28473090
          Length = 198

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 578 AASSRAXCSKDFKISSGIGGGVXRCAPWGWYPF 480
           AASS    +     ++G  GG  +   WGW PF
Sbjct: 93  AASSSLAAASTASATAGAVGGRRKARVWGWPPF 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,619,258
Number of Sequences: 37544
Number of extensions: 267602
Number of successful extensions: 769
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)