Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0795
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)                 31   1.3  
SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_16648| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  

>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
          Length = 1223

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +2

Query: 395  PLTVSSPKAASPTRVMMVRTIVSLTLPTRTDTSPRARISXLLPRSPR 535
            P+TVSS  A + T +   RT+ SLT P    T   A+ +   P SPR
Sbjct: 978  PVTVSSKPAIALTTLAPQRTLSSLTGPLIKTTVSPAKTTLSNPSSPR 1024


>SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1097

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 395  PLTVSSPKAASPTRVMMVRTIVSLTLPTRTDTSPRARIS--XLLPRSPRKS*NLWSXTPV 568
            P T +S  A SPT + +   +    L + TD++ R++ S   +LP+        W    +
Sbjct: 912  PTTPTSSGAGSPTEIALPTALPMPALDSPTDSNDRSKKSKRGVLPKQATSIMKTWLFQHI 971

Query: 569  MRP 577
            M P
Sbjct: 972  MHP 974


>SB_16648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 388 GVATNGVQSQGSFAYKGDDGQDYSITYTADENG 486
           G+  NG  + GS++Y  DD  D+ +    D NG
Sbjct: 15  GIVDNGNNNGGSYSYNNDD-DDFIVGGIGDNNG 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,850,186
Number of Sequences: 59808
Number of extensions: 272752
Number of successful extensions: 666
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)