BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0795 (732 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF152478-1|AAD43739.1| 807|Homo sapiens protocadherin alpha 13 ... 31 4.3 AF152309-1|AAD43703.1| 950|Homo sapiens protocadherin alpha 13 ... 31 4.3 AC005609-1|AAC34314.1| 807|Homo sapiens KIAA0345-like 1 protein. 31 4.3 AB208924-1|BAD92161.1| 921|Homo sapiens protocadherin alpha 13 ... 31 4.3 >AF152478-1|AAD43739.1| 807|Homo sapiens protocadherin alpha 13 short form protein protein. Length = 807 Score = 31.1 bits (67), Expect = 4.3 Identities = 21/51 (41%), Positives = 27/51 (52%) Frame = +2 Query: 452 TIVSLTLPTRTDTSPRARISXLLPRSPRKS*NLWSXTPVMRPLVSLMMVHT 604 TI SL+LP R DT P A I+ L+ S R S + T + P V +V T Sbjct: 351 TITSLSLPIREDTQPSAIIA-LISVSDRDSGSNGQVTCTLTPHVPFKLVST 400 >AF152309-1|AAD43703.1| 950|Homo sapiens protocadherin alpha 13 protein. Length = 950 Score = 31.1 bits (67), Expect = 4.3 Identities = 21/51 (41%), Positives = 27/51 (52%) Frame = +2 Query: 452 TIVSLTLPTRTDTSPRARISXLLPRSPRKS*NLWSXTPVMRPLVSLMMVHT 604 TI SL+LP R DT P A I+ L+ S R S + T + P V +V T Sbjct: 351 TITSLSLPIREDTQPSAIIA-LISVSDRDSGSNGQVTCTLTPHVPFKLVST 400 >AC005609-1|AAC34314.1| 807|Homo sapiens KIAA0345-like 1 protein. Length = 807 Score = 31.1 bits (67), Expect = 4.3 Identities = 21/51 (41%), Positives = 27/51 (52%) Frame = +2 Query: 452 TIVSLTLPTRTDTSPRARISXLLPRSPRKS*NLWSXTPVMRPLVSLMMVHT 604 TI SL+LP R DT P A I+ L+ S R S + T + P V +V T Sbjct: 351 TITSLSLPIREDTQPSAIIA-LISVSDRDSGSNGQVTCTLTPHVPFKLVST 400 >AB208924-1|BAD92161.1| 921|Homo sapiens protocadherin alpha 13 isoform 1 precursor variant protein. Length = 921 Score = 31.1 bits (67), Expect = 4.3 Identities = 21/51 (41%), Positives = 27/51 (52%) Frame = +2 Query: 452 TIVSLTLPTRTDTSPRARISXLLPRSPRKS*NLWSXTPVMRPLVSLMMVHT 604 TI SL+LP R DT P A I+ L+ S R S + T + P V +V T Sbjct: 368 TITSLSLPIREDTQPSAIIA-LISVSDRDSGSNGQVTCTLTPHVPFKLVST 417 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 75,598,576 Number of Sequences: 237096 Number of extensions: 1370439 Number of successful extensions: 4071 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 3896 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4071 length of database: 76,859,062 effective HSP length: 88 effective length of database: 55,994,614 effective search space used: 8679165170 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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