Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0795
         (732 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF152478-1|AAD43739.1|  807|Homo sapiens protocadherin alpha 13 ...    31   4.3  
AF152309-1|AAD43703.1|  950|Homo sapiens protocadherin alpha 13 ...    31   4.3  
AC005609-1|AAC34314.1|  807|Homo sapiens KIAA0345-like 1 protein.      31   4.3  
AB208924-1|BAD92161.1|  921|Homo sapiens protocadherin alpha 13 ...    31   4.3  

>AF152478-1|AAD43739.1|  807|Homo sapiens protocadherin alpha 13
           short form protein protein.
          Length = 807

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 21/51 (41%), Positives = 27/51 (52%)
 Frame = +2

Query: 452 TIVSLTLPTRTDTSPRARISXLLPRSPRKS*NLWSXTPVMRPLVSLMMVHT 604
           TI SL+LP R DT P A I+ L+  S R S +    T  + P V   +V T
Sbjct: 351 TITSLSLPIREDTQPSAIIA-LISVSDRDSGSNGQVTCTLTPHVPFKLVST 400


>AF152309-1|AAD43703.1|  950|Homo sapiens protocadherin alpha 13
           protein.
          Length = 950

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 21/51 (41%), Positives = 27/51 (52%)
 Frame = +2

Query: 452 TIVSLTLPTRTDTSPRARISXLLPRSPRKS*NLWSXTPVMRPLVSLMMVHT 604
           TI SL+LP R DT P A I+ L+  S R S +    T  + P V   +V T
Sbjct: 351 TITSLSLPIREDTQPSAIIA-LISVSDRDSGSNGQVTCTLTPHVPFKLVST 400


>AC005609-1|AAC34314.1|  807|Homo sapiens KIAA0345-like 1 protein.
          Length = 807

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 21/51 (41%), Positives = 27/51 (52%)
 Frame = +2

Query: 452 TIVSLTLPTRTDTSPRARISXLLPRSPRKS*NLWSXTPVMRPLVSLMMVHT 604
           TI SL+LP R DT P A I+ L+  S R S +    T  + P V   +V T
Sbjct: 351 TITSLSLPIREDTQPSAIIA-LISVSDRDSGSNGQVTCTLTPHVPFKLVST 400


>AB208924-1|BAD92161.1|  921|Homo sapiens protocadherin alpha 13
           isoform 1 precursor variant protein.
          Length = 921

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 21/51 (41%), Positives = 27/51 (52%)
 Frame = +2

Query: 452 TIVSLTLPTRTDTSPRARISXLLPRSPRKS*NLWSXTPVMRPLVSLMMVHT 604
           TI SL+LP R DT P A I+ L+  S R S +    T  + P V   +V T
Sbjct: 368 TITSLSLPIREDTQPSAIIA-LISVSDRDSGSNGQVTCTLTPHVPFKLVST 417


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,598,576
Number of Sequences: 237096
Number of extensions: 1370439
Number of successful extensions: 4071
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4071
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)