Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0795
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27660.1 68418.m03315 DegP protease, putative similar to Seri...    34   0.085
At5g49910.1 68418.m06180 heat shock protein 70 / HSP70 (HSC70-7)...    27   9.7  

>At5g27660.1 68418.m03315 DegP protease, putative similar to Serine
           protease HTRA2, mitochondrial precursor (High
           temperature requirement protein A2) (HtrA2) (Omi
           stress-regulated endoprotease) (Serine proteinase OMI)
           (SP:O43464) {Homo sapiens}
          Length = 459

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = +2

Query: 404 VSSPKAASPTRVMMVRTIVSLTLPTRTDTSPRARISXLLPRSPRKS*NL--WSXTP--VM 571
           VSS K +   R++ V T  S  L   T+   R R+S  +P S R+S +L  W  +P  + 
Sbjct: 39  VSSSKRSELIRIISVATATSGILYASTNPDARTRVSLAIPESVRESLSLLPWQISPGLIH 98

Query: 572 RPLVSL 589
           RP  SL
Sbjct: 99  RPEQSL 104


>At5g49910.1 68418.m06180 heat shock protein 70 / HSP70 (HSC70-7)
           identical to heat shock protein 70 [Arabidopsis
           thaliana] GI:6746592
          Length = 718

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 265 SSRSQASADAGAQILRLNNEVTAEGFSYDFE 357
           ++   A   AG ++LR+ NE TA   +Y FE
Sbjct: 228 TATKDAGRIAGLEVLRIINEPTAASLAYGFE 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,954,255
Number of Sequences: 28952
Number of extensions: 180692
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)