Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0794
(806 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.5
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.5
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 4.4
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 4.4
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 5.8
DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex det... 22 7.7
DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex det... 22 7.7
DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex det... 22 7.7
DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex det... 22 7.7
DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex det... 22 7.7
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 22 7.7
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 7.7
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 7.7
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 7.7
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.4 bits (48), Expect = 2.5
Identities = 8/45 (17%), Positives = 24/45 (53%)
Frame = +3
Query: 6 SARGQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 140
+ R + Y C + + ++ +RR + +++++P + +S+L
Sbjct: 217 AVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.4 bits (48), Expect = 2.5
Identities = 8/45 (17%), Positives = 24/45 (53%)
Frame = +3
Query: 6 SARGQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 140
+ R + Y C + + ++ +RR + +++++P + +S+L
Sbjct: 217 AVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 22.6 bits (46), Expect = 4.4
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 55 MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLT 189
M C P DT +Y+F R Y + T VI + + TLT
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT 272
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.6 bits (46), Expect = 4.4
Identities = 8/45 (17%), Positives = 24/45 (53%)
Frame = +3
Query: 6 SARGQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 140
+ R + Y C + + ++ +RR + +++++P + +S+L
Sbjct: 213 AVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 257
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.2 bits (45), Expect = 5.8
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +3
Query: 27 YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 140
Y C + + LRR + ++++VP + +SYL
Sbjct: 215 YPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYL 252
>DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 7.7
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -2
Query: 694 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 596
S + S ++ NY +N NN+ ++ NY
Sbjct: 76 SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 7.7
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -2
Query: 694 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 596
S + S ++ NY +N NN+ ++ NY
Sbjct: 76 SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 7.7
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -2
Query: 694 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 596
S + S ++ NY +N NN+ ++ NY
Sbjct: 76 SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 7.7
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -2
Query: 694 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 596
S + S ++ NY +N NN+ ++ NY
Sbjct: 76 SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.8 bits (44), Expect = 7.7
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -2
Query: 694 SPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 596
S + S ++ NY +N NN+ ++ NY
Sbjct: 76 SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.8 bits (44), Expect = 7.7
Identities = 9/45 (20%), Positives = 23/45 (51%)
Frame = +3
Query: 6 SARGQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 140
+ R + Y C ++ + LRR + +++++P + +S+L
Sbjct: 209 AVRNEAFYICCEEPYPDIVFNITLRRKTLFYTVNLIIPCVGISFL 253
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.8 bits (44), Expect = 7.7
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = -2
Query: 745 VFLERRLTDDISANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNYRG 590
V L + T + +VS P S Y F+ + +++ SW Y G
Sbjct: 132 VTLMTKATLKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGSWTYNG 183
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.8 bits (44), Expect = 7.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 441 RQQARKLPTPGTGGSDE 491
R+Q RK TPG SDE
Sbjct: 1768 RRQQRKQQTPGDVESDE 1784
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 7.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 441 RQQARKLPTPGTGGSDE 491
R+Q RK TPG SDE
Sbjct: 1764 RRQQRKQQTPGDVESDE 1780
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,120
Number of Sequences: 438
Number of extensions: 5227
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -