Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0793
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    28   1.1  
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    27   1.9  
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    27   1.9  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    27   2.6  
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.6  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   7.8  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    25   7.8  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   7.8  

>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 481  FALLCTSNVPSKSITFTNGVWAKKTNLVGETSNSSLETRSAP 356
            F++  +S++P  +I FTN +  + T      SNS    ++ P
Sbjct: 1298 FSVATSSDIPKANIDFTNDISTQNTFPASPVSNSGFSRQTYP 1339


>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 343 HRLTDDSRIYRXGSG----TLKTAFDLMTTSLSSLGGRIRF 233
           HR   +S+IYR G+G       T FD     ++ +GG +R+
Sbjct: 274 HRTQLNSKIYRIGAGDDAKNASTDFDATEKRITPMGGFVRY 314


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 343 HRLTDDSRIYRXGSG----TLKTAFDLMTTSLSSLGGRIRF 233
           HR   +S+IYR G+G       T FD     ++ +GG +R+
Sbjct: 274 HRTQLNSKIYRIGAGDDAKNASTDFDATEKRITPMGGFVRY 314


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 500 EVQLLEGKEVSVQALAKDFQYFEFTTGYLEEADRKLSIVGH 622
           E  L    ++S++ L+KDF +       + E D K+ +VGH
Sbjct: 112 ETTLEPESDMSLETLSKDFTHAVSYVQRMFELDEKIILVGH 152


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 194 LMRYLTEVLCPCFFLSRSRQASPLNIYGESLLVGYVTVV 78
           L+R+     CP +F+ +S + S +  +  S L GY  +V
Sbjct: 39  LVRHNALTFCPYYFIEKSGKGSVVYFHPTSDLCGYKNIV 77


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +1

Query: 7   NTPEFGNYASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRY 186
           + P F  + S V     SR + L   +T PT+  + Y    EA L    +    K  +  
Sbjct: 734 SNPAFAKFVSDVERLKESRKLELNGYLTKPTTRLARYPLLLEAVLKYTDEGNPDKQDIPK 793

Query: 187 LINI 198
           +INI
Sbjct: 794 VINI 797


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 571 HNRLS*RGRPQAFYRRSFGPGKESRYNR*YHPIW*QEKH 687
           H+R S + R + +  RS+    + RY   Y P   +E+H
Sbjct: 213 HSRFSEKPRGERYDIRSYSRSHKERYEDRYRPTRRRERH 251


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 251 GWKNPISAAIAS*FLLLEMLMRYLTEVLCPCFFLSRSRQASPLNIYGESL 102
           G++  IS  + S   LL  L    T   C C F S +  +SP + Y ESL
Sbjct: 413 GFETKISINLDSDIKLLNTLSPLETFFWC-CSFPSTASTSSPFSYYPESL 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,249
Number of Sequences: 5004
Number of extensions: 56678
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)