Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0793
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476...    29   2.7  
07_03_1792 + 29569623-29569737,29569848-29569981,29570117-295702...    29   3.5  
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694...    28   8.1  

>08_02_0733 + 20546072-20546325,20546924-20547017,20547441-20547624,
            20547722-20547831,20548328-20548423,20548525-20548679,
            20548743-20548986,20549159-20549314,20549600-20549829,
            20552213-20552316,20552420-20552505,20552776-20553066,
            20553383-20553475,20553640-20553735,20553838-20553939,
            20554196-20554266,20554784-20555035,20555786-20556529,
            20557038-20557119,20557192-20557347,20557446-20557655,
            20558282-20558665
          Length = 1397

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +3

Query: 444  DLEGTLDVQSKAKTQQAKLRFNFWRARRSASRLWQKTSSISSSQ---QVILKRQTASFLS 614
            DLE  L ++       AK + N     + A++L Q T S+ SS    + + K + AS  S
Sbjct: 996  DLEFELQLEMALLASAAKSQDN-----KLATQLNQSTDSLLSSTPPLKKLRKSEEASSNS 1050

Query: 615  SVIWSRKR 638
            SV+WSR R
Sbjct: 1051 SVVWSRNR 1058


>07_03_1792 +
           29569623-29569737,29569848-29569981,29570117-29570284,
           29572817-29573003,29573098-29573422,29573591-29574368,
           29574897-29575022
          Length = 610

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -3

Query: 475 LLCTSNVPSKSITFTNGVWAKKTNLVGETSNSSLETRSAPREEXHRLTDDSRIYRXGSGT 296
           L CTSN  SK    TN  +  K   +G   N +   +S+P E   + TD    Y   + +
Sbjct: 186 LPCTSNKNSKKQKETNDDFKGKDLEIGSPRNLNTAYQSSPNERSIKPTDRRNEYPLQNNS 245

Query: 295 LKTAFDLMTTS 263
            + A + +  S
Sbjct: 246 KEAAMENLEES 256


>02_04_0544 -
           23768808-23768910,23769005-23769030,23769379-23769497,
           23769542-23769668,23769842-23769905,23769981-23770095,
           23770867-23771101,23771196-23771382,23771948-23772305,
           23772432-23772465
          Length = 455

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +2

Query: 380 AVRCFTNQIRFLGPNTICKG--YRLRR-NIGRAKQGEDPASQVEVQLLEGKEV--SVQAL 544
           A R  TN+I+F  P    KG  Y+LR   I   +    P S V   + E K V  SVQ  
Sbjct: 143 ACRMMTNEIQFFDPKDFTKGFVYKLRMPGIAAMQLASAPGSHVAGFVPEAKGVPASVQIF 202

Query: 545 AKD 553
           + D
Sbjct: 203 SCD 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,402,088
Number of Sequences: 37544
Number of extensions: 368633
Number of successful extensions: 807
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)