Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0793
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_40133| Best HMM Match : Tat (HMM E-Value=1.4)                       31   1.2  
SB_36466| Best HMM Match : Tat (HMM E-Value=1.4)                       31   1.2  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_28397| Best HMM Match : DUF1605 (HMM E-Value=6.1)                   29   4.8  
SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               28   8.3  

>SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1013

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 92  TQPAVTLRIYSAERPASTWIRRNRDTRPLLDTSSTSPIIGIRKLLL 229
           T+PA TL I+  E PA+  I   R+T   L      PI+ +R+ +L
Sbjct: 852 TRPAYTLIIHERETPAALIIIHARETNAALIIIHLLPIVRVRETVL 897


>SB_40133| Best HMM Match : Tat (HMM E-Value=1.4)
          Length = 160

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 422 NTICKGYRLRRNIGRAKQGEDPASQVEVQLLEGKEVSVQALAKDFQYFEFTT 577
           N IC   R RR   +AK+  D  SQVE + L  ++    A+ +  + F + T
Sbjct: 97  NAICSRRRRRRTSAKAKRKIDTQSQVEFEELGPEDTYEPAVIEHSKQFTYVT 148


>SB_36466| Best HMM Match : Tat (HMM E-Value=1.4)
          Length = 102

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 422 NTICKGYRLRRNIGRAKQGEDPASQVEVQLLEGKEVSVQALAKDFQYFEFTT 577
           N IC   R RR   +AK+  D  SQVE + L  ++    A+ +  + F + T
Sbjct: 39  NAICSRRRRRRTSAKAKRKIDTQSQVEFEELGPEDTYEPAVIEHSKQFTYVT 90


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/71 (23%), Positives = 27/71 (38%)
 Frame = +1

Query: 31  ASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINISNNR 210
           +SG     PS      T  +Y  + +  Y   GE C+D+D+   G  T    +   +N  
Sbjct: 641 SSGAHTCAPSGSTCTNTVGSYTCACNVGYTGDGETCVDIDECSAGSHTCAPSVSTCTNTV 700

Query: 211 NQEAIAAEIGF 243
                A   G+
Sbjct: 701 GSFTCACNAGY 711


>SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 421 WAKKTNLVGETSNSSLETRSAPREEXHR 338
           W K  +++ ++SNS+LE  SA RE+  R
Sbjct: 97  WLKDGHVITDSSNSTLEIESASREDAGR 124


>SB_28397| Best HMM Match : DUF1605 (HMM E-Value=6.1)
          Length = 325

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -3

Query: 457 VPSKSITFTNGVWAKKTNLVGETSNSSLETRSAPREEXHRLTDDSRIYRXGSGTLK 290
           +PSK+   +  +W+++  L    S+S  +   APR   H     SR+Y    GTL+
Sbjct: 155 IPSKNGGESAPLWSQRQELHPPLSDSPCQ---APRYNGHSTITGSRLYYFAMGTLR 207


>SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 731

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 470 KQGEDPASQVEVQLLEGKEVSVQALAKDFQYFEFTTGYLEE 592
           K+ EDP+++  V+LL G +     LAK  +  E      EE
Sbjct: 544 KELEDPSNEERVRLLSGADPEPDILAKKIEELELRLAEKEE 584


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/77 (23%), Positives = 34/77 (44%)
 Frame = +1

Query: 19   FGNYASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINI 198
            F N  S +V+  P R +   T VT+ T+     + +      L ++ +   T V      
Sbjct: 1519 FPNTESSLVYTKPQRPLTANTFVTFQTTQVEQLVKTHNE--GLPRRSRDDDTGVDENAGD 1576

Query: 199  SNNRNQEAIAAEIGFFH 249
             ++ + ++ A  +GFFH
Sbjct: 1577 DDDDDDDSDAPALGFFH 1593


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,154,299
Number of Sequences: 59808
Number of extensions: 424574
Number of successful extensions: 947
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)