Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0793
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr... 30 1.4
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond... 30 1.4
U50199-1|AAA91262.1| 427|Caenorhabditis elegans Pharyngeal enha... 29 3.2
AF160187-1|AAD42897.1| 425|Caenorhabditis elegans pharyngeal en... 29 3.2
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical ... 27 9.7
>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
R13G10.1 protein.
Length = 1469
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 536 QALAKDFQYFEFTTGYLEEADRKLSIVGHLVPEKR--VDITADIILSGDKKNI 688
Q +A+ E +LE+A++KLS + H+ EKR D A + + D K I
Sbjct: 930 QDIARQTAIIENNPSHLEQAEKKLSELEHMCLEKRSEADALAQLEVGEDVKGI 982
>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
condensation protein protein.
Length = 1469
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 536 QALAKDFQYFEFTTGYLEEADRKLSIVGHLVPEKR--VDITADIILSGDKKNI 688
Q +A+ E +LE+A++KLS + H+ EKR D A + + D K I
Sbjct: 930 QDIARQTAIIENNPSHLEQAEKKLSELEHMCLEKRSEADALAQLEVGEDVKGI 982
>U50199-1|AAA91262.1| 427|Caenorhabditis elegans Pharyngeal
enhancer binding protein1, isoform a protein.
Length = 427
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = +2
Query: 134 PASTWIRRNRDTRPL--LDTSSTSPIIGIRKLLLP----KSDSSTQ 253
PA + +D +PL L TSP+I LLLP K DSSTQ
Sbjct: 346 PAPLQVLNLKDLKPLPPLANIQTSPVIQAANLLLPVAALKKDSSTQ 391
>AF160187-1|AAD42897.1| 425|Caenorhabditis elegans pharyngeal
enhancer binding protein-1 protein.
Length = 425
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = +2
Query: 134 PASTWIRRNRDTRPL--LDTSSTSPIIGIRKLLLP----KSDSSTQ 253
PA + +D +PL L TSP+I LLLP K DSSTQ
Sbjct: 344 PAPLQVLNLKDLKPLPPLANIQTSPVIQAANLLLPVAALKKDSSTQ 389
>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
protein F07A11.4 protein.
Length = 1095
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 10 TPEFGNYASGVVFYLPSRVMALETTVTYPTSSDSPYIFSGEA 135
TP F + Y P+ L TT T T+SD+P + S A
Sbjct: 30 TPSFNTFKYSPSSYTPNISRNLNTTSTGSTTSDTPKLSSSSA 71
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 429 FVKVIDLEGTLDVQSKAKTQQAKLRFNFWRARRSASRLW 545
F K ++ + + +T + +R +FW RSA RLW
Sbjct: 2350 FFKSLEANNSEMLTRMLETTEHDIRASFWHCMRSALRLW 2388
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 429 FVKVIDLEGTLDVQSKAKTQQAKLRFNFWRARRSASRLW 545
F K ++ + + +T + +R +FW RSA RLW
Sbjct: 2347 FFKSLEANNSEMLTRMLETTEHDIRASFWHCMRSALRLW 2385
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 429 FVKVIDLEGTLDVQSKAKTQQAKLRFNFWRARRSASRLW 545
F K ++ + + +T + +R +FW RSA RLW
Sbjct: 2350 FFKSLEANNSEMLTRMLETTEHDIRASFWHCMRSALRLW 2388
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 429 FVKVIDLEGTLDVQSKAKTQQAKLRFNFWRARRSASRLW 545
F K ++ + + +T + +R +FW RSA RLW
Sbjct: 2347 FFKSLEANNSEMLTRMLETTEHDIRASFWHCMRSALRLW 2385
>AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical
protein K09F6.6 protein.
Length = 1010
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 455 NIGRAK-QGEDPASQVEVQLLEGKEVSVQALAKDFQYFEFTTGYLEEADRKLSIVGHLVP 631
N+G+A QG + + +V+L E +V+++ + Q+F+ L E R +GH V
Sbjct: 681 NMGKAVYQGYENETLTDVELEEYCKVTLRPIILGSQHFKALKENLTEEQRNWMDMGHFVM 740
Query: 632 EKRV 643
K +
Sbjct: 741 AKLI 744
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,594,088
Number of Sequences: 27780
Number of extensions: 309459
Number of successful extensions: 829
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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