Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0793
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43050.1 68415.m05342 pectinesterase family protein contains ...    29   2.9  
At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    28   5.1  
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic...    28   6.8  
At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR...    28   6.8  
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ...    27   9.0  
At3g16860.1 68416.m02156 phytochelatin synthetase-related contai...    27   9.0  
At1g54920.2 68414.m06269 expressed protein                             27   9.0  
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa...    27   9.0  

>At2g43050.1 68415.m05342 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 518

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -3

Query: 361 APREEXHRLTDDSRIYRXGSGTLKTAFD-LMTTSLSSLGGRIR 236
           AP EE   L  D+ +   GSGT KT  + L++TSL+S GGR +
Sbjct: 205 APVEE---LNVDAVVAPDGSGTHKTIGEALLSTSLASSGGRTK 244


>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/27 (33%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = -3

Query: 664 DDISGYIYSLF-RDQMTDDRKLAVCLF 587
           D++S Y+  ++ RD+  ++R++A+C+F
Sbjct: 881 DELSSYLTPMWGRDKTAEERRIAICIF 907


>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical
           to chromomethylase CMT2 [Arabidopsis thaliana]
           GI:14583094
          Length = 1295

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 480 KTQQAKLRFNF-WRARRSASRLWQKTSSISSSQQVILKRQTASFLSSVI 623
           KT +  L+F   W+  RS    W+    +S+ Q  I +  T+ F S ++
Sbjct: 852 KTGKNGLKFKVHWKGYRSDEDTWELAEELSNCQDAIREFVTSGFKSKIL 900


>At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.; closest
            homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
          Length = 1449

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 49   YLPSRVMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYL-INISNNRNQ 216
            Y   R      TVT P SS S      +ACL +D   +G K   RYL +N   N  Q
Sbjct: 1241 YFTYRAYGDSLTVTLPRSSLSQSFLRFKACLVVDPLSEG-KGFYRYLEVNFGFNGKQ 1296


>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 671

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +1

Query: 64  VMALETTVTYPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINISNNRNQEAIAA 231
           V  + T   Y  S  S      E C ++ KKK+   + V  ++ + N RN E   A
Sbjct: 393 VCPIGTDTFYNCSESSCSFVLHETCANISKKKRHFLSPVPLVLCLQNQRNTETCNA 448


>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
           Pfam PF04833: Phytochelatin synthetase-like conserved
           region
          Length = 653

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 222 YCCRNR-ILPPKLDKEVVIKSNAVFKVPEPYR 314
           YCCRN  ILP  +D E   KS +VF++ E Y+
Sbjct: 316 YCCRNGTILPRSMDPE---KSKSVFQI-EVYK 343


>At1g54920.2 68414.m06269 expressed protein
          Length = 890

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = +3

Query: 432 VKVIDLEGTLDVQSKAKTQQAKLRFNFWRARRSASRLWQKTSSISSSQQVILKRQTASFL 611
           +K+I+L G+L+ QSK  +   ++     +  R A+ +W++       ++++ K Q  S+ 
Sbjct: 690 LKIINL-GSLEQQSKYASTWFEISSTCAQELRHAASIWKQVIKNDVQEEILSKPQGKSYA 748

Query: 612 SSV 620
            SV
Sbjct: 749 LSV 751


>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 491

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
 Frame = +3

Query: 447 LEGTLDVQSKAKTQQAKLRFNFWRA----RRSASRL----WQKTSSISSSQQVILKRQTA 602
           LE  L+V+S   T Q   RF+FW A    RR + RL     Q T  +   + V + RQ +
Sbjct: 422 LEILLNVESMIPTPQDPERFSFWLATLTDRRPSERLELLRLQDTGEVLDYRLVQIARQIS 481

Query: 603 SFLSSV 620
            F  S+
Sbjct: 482 LFHQSL 487


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,963,490
Number of Sequences: 28952
Number of extensions: 300159
Number of successful extensions: 849
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)