Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0792
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0350 + 17826907-17827041,17828018-17828070,17828305-178284...    27   8.9  
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264...    27   8.9  

>12_02_0350 +
           17826907-17827041,17828018-17828070,17828305-17828414,
           17828629-17828796,17828898-17829155,17829295-17829395
          Length = 274

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 385 RETPCVFIKTNSIWHGNVYVKKRITI 462
           RE  CV++ TN+++ G++++  R  +
Sbjct: 205 RELACVYVPTNNLYLGDIFLMSRADV 230


>05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,
            2643625-2643730,2643770-2644349,2645780-2645871,
            2645969-2646035,2646126-2646231,2646628-2646708,
            2646789-2647058,2647158-2648788,2648834-2649385,
            2650602-2651324,2651451-2651526
          Length = 1486

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 427  HGNVYVK-KRITIKTLFGLALSLGNITFFLKVSFYSIKKE-KKTALCQSVRIDQWLSN 594
            HG+V  + K+I  +     ALS+ + T F+  SF+  KK  +  AL + V    WL N
Sbjct: 985  HGDVIKRQKKILARLGVSEALSILDATHFVADSFFRTKKMLEAIALGKLVVTSMWLEN 1042


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,695,326
Number of Sequences: 37544
Number of extensions: 159517
Number of successful extensions: 246
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)