Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0792
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine re...    30   1.1  
Z81489-10|CAB04004.2|  337|Caenorhabditis elegans Hypothetical p...    30   1.5  
AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical ...    28   4.6  
AF016433-2|AAB65389.1|  336|Caenorhabditis elegans Seven tm rece...    27   8.1  

>AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine
           receptor, class v protein19 protein.
          Length = 360

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 361 NVNIIN*SSLKSF*CVIVELICFLTILFVNWKIVWLNKPELLIELKPRTNLLMKVC 194
           N NII  S+  +F  VI+  +  L    + WK +      +LI L+    L  +VC
Sbjct: 225 NPNIIKKSTKTAFVFVIISCLICLIFYSLIWKFIKTRSQTVLISLQREIRLAFQVC 280


>Z81489-10|CAB04004.2|  337|Caenorhabditis elegans Hypothetical
           protein C55A1.8 protein.
          Length = 337

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +1

Query: 454 ITIKTLFGLALSLGNITFFLKVSFYSIKKEKK 549
           ++I ++F L+ ++ +   FLK+SF+SIK  +K
Sbjct: 28  VSIFSIFVLSYTISSFYIFLKLSFFSIKDREK 59


>AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical
           protein K07E8.5 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 304 LICFLTILFVNWKIVWLNKPELLIELKPRTNLLMKV---C*LNCYLV 173
           + C  T L VN+  + LN P +L+     +NLL+ V       CYL+
Sbjct: 211 IFCNFTALMVNFMEIILNDPSMLVYFVDLSNLLVVVNGTANFFCYLI 257


>AF016433-2|AAB65389.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 143 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 319 CVIVELICFLTILFVNWKI-VWLNKPELLIELKPR 218
           C++V + CF TIL+  +KI + L   + L+  K R
Sbjct: 208 CILVMVACFSTILYCAFKIYIRLKSAQALMSTKTR 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,628,044
Number of Sequences: 27780
Number of extensions: 180531
Number of successful extensions: 328
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)