Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0789
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   3.5  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    26   3.5  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   8.1  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 531 GVGHXPRRVMVSTPSDDSRDSHSFQAXRFQAARNV 427
           GVG   ++VM+ T SD+S  S +FQ       RN+
Sbjct: 520 GVGFWSKQVMILTFSDNSSISCAFQTNVPSLPRNI 554


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 100 NMVATTFLLFIEDYSRKSLGYNFVCLYSP 14
           N +A  FL   +DY   S G   +CL++P
Sbjct: 629 NGLAQIFLALTQDYKNSSSGIPDLCLWNP 657


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 25   NIQSYIQAIFGSNLQ*KARMSLLPYFFDDFGSRRPRRLLDQHFGL 159
            N  S I A+    L   ++M   PY    F     +RL+ +H GL
Sbjct: 972  NRDSEIAAVIRDTLTIDSKMDGKPYKVGKFAHTLRKRLMREHLGL 1016


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,474
Number of Sequences: 5004
Number of extensions: 38030
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)