Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0789
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 37   0.014
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 35   0.043
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 35   0.043
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)                 34   0.098
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)                       33   0.13 
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.13 
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)                   32   0.30 
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   31   0.69 
SB_10385| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_40492| Best HMM Match : PROCN (HMM E-Value=0)                       28   4.9  
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)                 28   4.9  
SB_59044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)                 27   8.5  

>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +3

Query: 303 LDVQHFAPXEISVKTADGYIVVXXXXXXXXXXXGYISRQFVRRYALPESAAPENCGNR 476
           LDV+ + P EIS K  +G + V           G+  ++F R + LPE   PEN  +R
Sbjct: 12  LDVKEYRPEEISFKVENGVVKVQGRHVNEGEF-GFELKEFRRTFTLPEGIDPENVTSR 68


>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +3

Query: 303 LDVQHFAPXEISVKTADGYIVVXXXXXXXXXXXGYISRQFVRRYALPESAAPENCGNR 476
           LDV+ + P EIS K  +G++ V           G+  ++F R +ALPE     N   R
Sbjct: 12  LDVREYRPEEISFKVENGFVKV-QGRHVNEGPFGFELKEFRRTFALPEGVEASNVKTR 68


>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +3

Query: 303 LDVQHFAPXEISVKTADGYIVVXXXXXXXXXXXGYISRQFVRRYALPESAAPENCGNR 476
           LDV+ + P EIS K  +G++ V           G+  ++F R +ALPE     N   R
Sbjct: 12  LDVREYRPEEISFKVENGFVKV-QGRHVNEGPFGFELKEFRRTFALPEGVEASNVKTR 68


>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
          Length = 185

 Score = 33.9 bits (74), Expect = 0.098
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 291 FQV-NLDVQHFAPXEISVKTADGYIVVXXXXXXXXXXXGYISRQFVRRYALPESAAPENC 467
           FQ+  LDV+ F P EI+ K  +G I V           G+ S++F R Y LPE     + 
Sbjct: 6   FQIATLDVREFKPEEITCKVENGKIKV-SGLQRHESEEGFDSKEFRRCYNLPEGVDESSI 64

Query: 468 GNR 476
             R
Sbjct: 65  STR 67



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +3

Query: 243 AAARMXGPASKSTKISFQVNLDVQHFAPXEISVKTADGYIVVXXXXXXXXXXXGYISRQF 422
           A      PA+K     F + LDV  F P E+ VK   G+ +             + +RQF
Sbjct: 85  ATTENKAPATKDDT-KFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQF 142

Query: 423 VRRYALP 443
            R + LP
Sbjct: 143 NRHFVLP 149


>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
          Length = 424

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 303 LDVQHFAPXEISVKTADGYIVVXXXXXXXXXXXGYISRQFVRRYALPESAAPENCGNR 476
           LDV+ + P EIS K  +G++ V           G+  ++F R + LPE     N   R
Sbjct: 12  LDVREYRPEEISFKVENGFVKV-QGRHVNEGPFGFELKEFRRTFTLPEGVEASNVKTR 68



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 303 LDVQHFAPXEISVKTADGYIVVXXXXXXXXXXXGYISRQFVRRYALPESAAPENCGNR 476
           LDV+ + P EIS K  +G++ V           G+  ++F R + LPE     N   R
Sbjct: 246 LDVREYRPEEISFKVENGFVKV-QGRHVNEGPFGFELKEFRRTFTLPEGVEASNVKTR 302


>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 303 LDVQHFAPXEISVKTADGYIVVXXXXXXXXXXXGYISRQFVRRYALPESAAPENCGNR 476
           LDV+ + P EIS K  +G++ V           G+  ++F R + LPE     N   R
Sbjct: 12  LDVREYRPEEISFKVENGFVKV-QGRHVNEGPFGFELKEFRRTFTLPEGVEASNVKTR 68


>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
          Length = 695

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +3

Query: 267 ASKSTKISFQVNLDVQHFAPXEISVKTADGYIVVXXXXXXXXXXXGYISRQFVRRYALPE 446
           A+   K+     LDV+ + P EIS K  +G +V            G+  ++F R + LPE
Sbjct: 2   ANNENKLEI-AKLDVREYRPEEISFKVENG-VVKVQGRHVNEGPFGFELKEFRRTFTLPE 59

Query: 447 SAAPENCGNR 476
                N   R
Sbjct: 60  GVEASNVKTR 69


>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 303 LDVQHFAPXEISVKTADGYIVVXXXXXXXXXXXGYISRQFVRRYALPESAAPENCGNR 476
           LDV+++ P EIS+K   G I +           GY + +F R Y LP+        +R
Sbjct: 45  LDVKNYRPEEISLKVEHGRIKI-DGKHKSEGEHGYETSEFHRSYNLPDGVDVSTVSSR 101


>SB_10385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 388 RKTSTGIFQGSSSDVTRCLKAXRLKTVGIATVIRRGTH 501
           RK  T    GS S++++CL    L ++GI   +  GT+
Sbjct: 10  RKKRTEYSLGSGSELSKCLSTWDLTSLGIGATLGAGTY 47


>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
          Length = 1784

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 575 NGTGFXRWHLSSPLTASGTXLG 510
           NGT + RWH S P+ A+   LG
Sbjct: 206 NGTSYRRWHFSLPVMATLYRLG 227


>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
          Length = 259

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +3

Query: 267 ASKSTKISFQVNLDVQHFAPXEISVKTADGYIVVXXXXXXXXXXXGYISRQFVRRYALPE 446
           A+      F + LDV  F P E+ VK   G+ +             + +RQF R + LP+
Sbjct: 20  AATKDDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLPQ 78


>SB_59044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 195 GSDTKKIIWC*GKAKMLVQQTARASRAKIIEEIW*QRHSCFLLKIT 58
           G++  +  WC  +   LV  TA  + A I +  W Q  + FL+ I+
Sbjct: 30  GANNSQYYWCQKQPVFLVPITASITGASIRQYFWCQYQAVFLVPIS 75


>SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
          Length = 1597

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
 Frame = -1

Query: 197  PAATLRRSSGVKARPK-----CWSNRRRGRLEPKSSK 102
            PA+TLRRS+ +K  P      CW+        PK+SK
Sbjct: 1313 PASTLRRSTRLKTTPTHLKDYCWTKHVARASVPKNSK 1349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,741,377
Number of Sequences: 59808
Number of extensions: 308061
Number of successful extensions: 664
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)