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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0788
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821...    32   0.53 
09_04_0568 + 18591757-18592251                                         30   2.2  
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442...    29   3.8  
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533...    29   3.8  
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804     29   3.8  
04_04_1296 + 32437089-32437386,32437422-32437429                       29   5.0  
11_06_0016 - 19284810-19284926,19285527-19286879                       28   6.6  
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497     28   6.6  
11_06_0011 + 19245742-19246440,19248361-19249170                       28   8.7  
06_01_0739 + 5468642-5468857,5468978-5469051,5469651-5470083           28   8.7  
02_05_0910 - 32684836-32685259,32685911-32685987,32686179-32686421     28   8.7  

>10_08_0883 +
           21279913-21280235,21281066-21281327,21281998-21282199,
           21282289-21282436,21282541-21283084
          Length = 492

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 605 SNIDLIPLYQVSRGWLAVLVRARXMRFPWY 516
           SN  L+PL  V   WLA++     M FPWY
Sbjct: 405 SNAFLLPLLAVLTPWLAIIGMFFVMAFPWY 434


>09_04_0568 + 18591757-18592251
          Length = 164

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = -3

Query: 604 QTSI*SRCTRCRG----AGWRCWCGLAXCG 527
           +TS  +RC+RCR      G+RC CG   CG
Sbjct: 98  KTSAVNRCSRCRKRVGLTGFRCRCGHLFCG 127


>12_01_1111 +
           11842837-11843094,11843142-11843255,11843267-11844247,
           11861747-11862025,11862998-11863098,11863723-11863792,
           11863947-11863974,11864057-11864114,11864440-11864536
          Length = 661

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 191 DKGNASDFGRARGQLPRWPDYVRYFDRALW 280
           D G      R    L RWP+Y R  D+ LW
Sbjct: 412 DNGMGGAIMRRAEALARWPEYQRLVDQELW 441


>07_03_1147 +
           24349811-24350161,24351031-24351366,24353260-24353376,
           24353585-24353647,24354066-24354139,24354216-24354306,
           24354791-24354850,24355270-24355462,24356242-24356522,
           24357435-24357536,24357664-24357774,24358410-24358475,
           24358562-24358660,24358757-24358788,24359171-24359274,
           24359380-24359507,24359625-24359756,24360051-24360359,
           24360887-24361071,24361161-24361263,24361407-24361552,
           24361748-24361827,24361901-24362103
          Length = 1121

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 278 WVVEKCARWAVPPPLDQDERPQPELIRPLP 367
           W + KC R+A PPP      P P  + P P
Sbjct: 37  WRLAKCPRFAPPPPQPTLPPPPPRTLPPPP 66


>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
          Length = 1209

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 191 DKGNASDFGRARGQLPRWPDYVRYFDRALW 280
           D G      R    L RWP+Y R  D+ LW
Sbjct: 347 DNGMGGAIMRRAEALARWPEYQRLVDQELW 376


>04_04_1296 + 32437089-32437386,32437422-32437429
          Length = 101

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 347 LVAGARLDPKVEARPISHISRPPTMLYRNTVRSLASAVA 231
           +VA  RL P+   +P S +  PP +L R + R L +AVA
Sbjct: 27  VVASVRLGPE-SMQPASAMQAPPQLLLRYSNRHLRNAVA 64


>11_06_0016 - 19284810-19284926,19285527-19286879
          Length = 489

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 311 PPPLDQDERPQPELIRPLPWVFFLMMLIAL 400
           PPP     RP P L   LP+ F+L   ++L
Sbjct: 90  PPPPPPPPRPAPSLASALPFWFYLTAAVSL 119


>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
          Length = 369

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 477 CTYKANV-DIYGPQVPGEPHXASPHQHRQPAPRHLVQ 584
           C Y  N+ + +     G P  A    H Q AP HLV+
Sbjct: 169 CVYSDNMPEFFAADATGNPREAPEEGHGQRAPPHLVR 205


>11_06_0011 + 19245742-19246440,19248361-19249170
          Length = 502

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 483 YKANVDIYGPQVPGEPHXASPHQHRQPAPRHLVQR 587
           Y+  V   GP   G+P  A   +H++ A RHL++R
Sbjct: 59  YQPQVVSLGPFHHGDPGLAPMEEHKRRALRHLLRR 93


>06_01_0739 + 5468642-5468857,5468978-5469051,5469651-5470083
          Length = 240

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 589 SRCTRCRGAGWRC 551
           SRC+R  G GWRC
Sbjct: 157 SRCSRVNGRGWRC 169


>02_05_0910 - 32684836-32685259,32685911-32685987,32686179-32686421
          Length = 247

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 589 SRCTRCRGAGWRC 551
           SRC+R  G GWRC
Sbjct: 169 SRCSRVNGRGWRC 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,191,540
Number of Sequences: 37544
Number of extensions: 372709
Number of successful extensions: 1167
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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